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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Manes.15G145300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
B3 |
Protein Properties |
Length: 368aa MW: 42180.9 Da PI: 5.1167 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.15G145300.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 33.5 | 7.3e-11 | 32 | 116 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
kv + + + l lp kfa+++g + s +l ++g Wev l + k+++++l +GW+e v+ ++ g f+ F + g s+f
Manes.15G145300.1.p 32 KVR--TTTIEDKKLNLPLKFARKFGDE--LSDVAKLIVPNGLIWEVGL--T-KGETIWLDNGWQELVEYYSVCNGWFLQFNYLGMSNF-- 112
444..455666779**********865..7889***************..5.55799*************************998888.. PP
EEEE CS
B3 93 vvkv 96
++ +
Manes.15G145300.1.p 113 NIFI 116
5555 PP
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2 | B3 | 41.2 | 3e-13 | 276 | 362 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
++ ++++l +p fa ++ + s t+++ed g +W + ++ ++g+ vl++G +eF ++n+++ gD+++F+l+++++ l+v vf
Manes.15G145300.1.p 276 SYIRTNLLHVPSAFAVKYLRN--ISETIKVEDCYGGEWIIHT-FCSCRGWsLVLRGGGEEFFSDNDMQNGDVCLFELIQERDVVLKVLVF 362
5667889***********655..6779************999.77777778***************************998888888887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MAPRPSMGSC ERPCCRQATT GVERSWRSFF IKVRTTTIED KKLNLPLKFA RKFGDELSDV 60 AKLIVPNGLI WEVGLTKGET IWLDNGWQEL VEYYSVCNGW FLQFNYLGMS NFNIFIFDET 120 VFEIGYPCIQ PRRKQEPSNM RNQTPFNEDE IEEDDDDFVD MFGSTPRPSS SKGTNSKKRD 180 YLGFNKRFKN PASAEKRKLK QDYQGKGKNC KIEDLEENDS DQDGIDLSPE CEAKIFISNK 240 FYVTLEKIYP GSKKAVDAAM ECKPQNPAFL VILGKSYIRT NLLHVPSAFA VKYLRNISET 300 IKVEDCYGGE WIIHTFCSCR GWSLVLRGGG EEFFSDNDMQ NGDVCLFELI QERDVVLKVL 360 VFHAYLE*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 3e-15 | 253 | 364 | 33 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 253 | 364 | 33 | 142 | B3 domain-containing transcription factor VRN1 |