 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.15G145200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
B3 |
| Protein Properties |
Length: 415aa MW: 47579.5 Da PI: 8.2118 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.15G145200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 51.8 | 1.5e-16 | 25 | 112 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
l+ ++ l+ + l++p kf++++g + s tl+ ++gr W v+l +k +++ ++ +GW eFv+ +++g f+vF++ g+s+f +v
Manes.15G145200.1.p 25 LMIASILQDKKLRIPGKFVKKYGDE--LSSIATLTVPNGRIWLVEL--EKVDKKLWFHNGWHEFVEHYSIRVGYFLVFRYGGESNF--NV 108
44455666677***********865..7779***************..********************************999999..99 PP
EEE- CS
B3 95 kvfr 98
+f+
Manes.15G145200.1.p 109 YIFD 112
8886 PP
|
| 2 | B3 | 60.6 | 2.6e-19 | 302 | 394 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
f+ +l +s+v + +l +p +fa+++ +++ ++l+ ++g++W v++ ++g+ l+kGW eFv +n+L+egD+++F+l++ +
Manes.15G145200.1.p 302 FKVILRSSYVYRGFLLHIPSSFARKYLTVTAF---IRLQVSDGKQWPVRC--VSGKGGAKLSKGWTEFVWENNLEEGDVCIFELINMIDI 386
5556778899999999**********877655...***************..88888999***********************9987666 PP
..EEEEE- CS
B3 91 elvvkvfr 98
l+v+vfr
Manes.15G145200.1.p 387 VLKVTVFR 394
67777776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MSQAVGPDVS DSPATGSNSC MFYKLMIASI LQDKKLRIPG KFVKKYGDEL SSIATLTVPN 60
GRIWLVELEK VDKKLWFHNG WHEFVEHYSI RVGYFLVFRY GGESNFNVYI FDLAVSEISY 120
PCNIPGSLQE PCHDNHYLVA HKKHVVHNDL LEILGSGPPC HTPISPRSKF FDKYVHCNCT 180
INENYDTSRE KLILRKDIYD MEENFQSSQH VGLQFNDIEP IRTPDKVVLP VSDEAEGRNR 240
RRKQKTDPIE HEPIIKQEAD EIPVGANVAS ETFTRRWRTV TPEEKQRTVN AADKFKSDNP 300
FFKVILRSSY VYRGFLLHIP SSFARKYLTV TAFIRLQVSD GKQWPVRCVS GKGGAKLSKG 360
WTEFVWENNL EEGDVCIFEL INMIDIVLKV TVFRVLQDAV PVNLLPNRIM HKIK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 7e-44 | 271 | 395 | 18 | 142 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 7e-44 | 271 | 395 | 18 | 142 | B3 domain-containing transcription factor VRN1 |
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