 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Manes.15G145100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
B3 |
| Protein Properties |
Length: 428aa MW: 49096.9 Da PI: 9.3648 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.15G145100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 48.2 | 1.9e-15 | 18 | 103 | 8 | 97 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
++ l+++ l++p+kf++++g + s tl+ ++ r W v++ r+ +++ ++ +GW eFv +++g f+vF+++g+s+f+ ++ v+
Manes.15G145100.1.p 18 PSILQQNKLMIPRKFVRKFGDE--LSGVATLTVPDDRIWLVTI--RQIDQKLWFCNGWHEFVVHYSICTGHFLVFRYEGNSNFSVHMYVL 103
56677889***********865..77799**************..**************************************8887775 PP
|
| 2 | B3 | 49.6 | 7e-16 | 336 | 426 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl s+ + ++l lp fa++h +g+ s ++l+ ++g+ W+v++ + k g+ l++GW eF ng egD++vF+l + +++ l
Manes.15G145100.1.p 336 VLRASYLYRGCILHLPSCFARKHlNGV---SDWIKLQFSDGKLWSVRC--SYKAGGAKLSQGWYEFSMNNGFAEGDVCVFELLNLRDTVL 420
6778999999*************8666...3479999***********..66667778***********************986688889 PP
EEEEE- CS
B3 93 vvkvfr 98
+v+vfr
Manes.15G145100.1.p 421 KVTVFR 426
999998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MSGSKLNKCG YFYRLIVPSI LQQNKLMIPR KFVRKFGDEL SGVATLTVPD DRIWLVTIRQ 60
IDQKLWFCNG WHEFVVHYSI CTGHFLVFRY EGNSNFSVHM YVLEPYRLKD PFTMMKTIKD 120
YSEQHHVFDE IDDGDSVEIL GSSPARVACD HLKPKTFDEH VEPNTTCRNY NLPSPQNLHN 180
EASYHPSGDS VKLQPTVHST QGIGSCTNEL QNSVDDMRLE LSHEKIQEHE KTMRKKLGID 240
EENLDPSNAA DIAKRSREGQ SSAESARKLK IIRRKKQSID PSKRKPTARR NVQGENRSRY 300
YKRASVRKRT VTNEDQERVK TAAAAFESVN PFCRVVLRAS YLYRGCILHL PSCFARKHLN 360
GVSDWIKLQF SDGKLWSVRC SYKAGGAKLS QGWYEFSMNN GFAEGDVCVF ELLNLRDTVL 420
KVTVFRV*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 5e-52 | 299 | 427 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 5e-52 | 299 | 427 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
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