PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G141700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 521aa MW: 56958 Da PI: 6.9274 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.6 | 0.00012 | 417 | 449 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq Manes.15G141700.1.p 417 DRITALQQIVSPF-----GKTDTASVLLEAIQYIKFLQ 449 6788888888887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.188 | 399 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.4E-9 | 414 | 456 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-10 | 414 | 466 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.25E-5 | 417 | 453 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MAQECSESSV AISSSTPSAA AAAAAGWWDL HHHASSLSSW TNHNINSSTT CSPWHQPNPS 60 SNSSCEEDVS MSTSFTNASN HSGLTVESSR RFIEPAASSP SEFMGEHASD SQLWSHILFG 120 VGSNGELHNI QDVGENLLDA LSSKSISSGI FEPACDYLKK MDNNWEYTNA PSFTSFDHKP 180 INGFSTDHHS FIESERVTKL SNLVRNWSIA PPDPGVEVSR ETIDPITCNI SLSSSLNHYT 240 HPQTYSDSAS FGTGMNRKSG FLSCYGHDLK VENEHRHVDI PGYIFRRSFN GNGIGNHIGL 300 SSGSVVADNS KYYHGVPDNT CTSARTFTDG AAFNGRYSKP LIDIQGPKPF FKSLNLSDCG 360 KQGVQNSLST GRGQGNTSEG KKKRSEHTSE IVLKKPKHES STVSSAKMQV PKVKLGDRIT 420 ALQQIVSPFG KTDTASVLLE AIQYIKFLQE QVQLLSSPYM KNNAHKDPWG LEKKEKGDVQ 480 LDLRSRGLCL VPISCTPQVY HENTGSDYWT PTYRSGCLYR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G141700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594263.1 | 0.0 | transcription factor bHLH111-like | ||||
TrEMBL | A0A2C9UFM8 | 0.0 | A0A2C9UFM8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005583m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10116 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 6e-72 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G141700.1.p |