PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G119000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26692.5 Da PI: 5.3559 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 189 | 225 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ Lr ++P ++ +++L +Av+Y+ksL Manes.15G119000.1.p 189 RQKMKKMVKALRGIVPGG-----DEMNTVTVLDEAVRYLKSL 225 799*************94.....59***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.55 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-5 | 183 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.62E-6 | 186 | 230 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-8 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-8 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQSDQQFQPR KAVPHFANQR GNNYMHISAA PSNAAALHPA AKHLMPVHGI EFQPSEVCPK 60 NFIIFDQNDH RSQIMFHPDV AHKFSGPGLN VYTGYVQENF DNEAVNDIER DISASLKEDS 120 DDIDVLLSLE EEEQDEYDDE EVSTARTYGN QGSNSPDSYS TYGYEPRKNG SSIQKSSGSF 180 SSCNSERKRQ KMKKMVKALR GIVPGGDEMN TVTVLDEAVR YLKSLKVEVQ KLGVGTSKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G119000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ839963 | 0.0 | FJ839963.1 Hevea brasiliensis bHLH1 transcription factor mRNA, complete cds. | |||
GenBank | KC822761 | 0.0 | KC822761.1 Hevea brasiliensis HLH transcription factor (bHLH1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594459.1 | 1e-180 | transcription factor bHLH144-like | ||||
Refseq | XP_021594460.1 | 1e-180 | transcription factor bHLH144-like | ||||
Refseq | XP_021594461.1 | 1e-180 | transcription factor bHLH144-like | ||||
Refseq | XP_021594462.1 | 1e-180 | transcription factor bHLH144-like | ||||
Refseq | XP_021594463.1 | 1e-180 | transcription factor bHLH144-like | ||||
Swissprot | Q9ASX9 | 3e-46 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | A0A2C9UG97 | 1e-179 | A0A2C9UG97_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027069m | 1e-179 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11411 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 3e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G119000.1.p |
Publications ? help Back to Top | |||
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