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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G118300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 308aa MW: 34531.1 Da PI: 6.7542 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.3 | 3.7e-34 | 160 | 217 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYY+Ct+++C+vkk+vers +dp++v++tYeg+Hnh+ Manes.15G118300.1.p 160 EDGYRWRKYGQKAVKNSPYPRSYYKCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 217 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-35 | 144 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-30 | 151 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.719 | 154 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-39 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 160 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSDEHRDHYY LASFQEDHHH VIDETGAYNQ KPPSIVLSST YGSQVFDDPS SYMSFTDYNS 60 LANAFGLSPS SSEVFSIGDL GGGGNNNENP VTPNSSVSFS SSEAGGEEDS GKTKKENPPK 120 VSEDGGQCSK KEGKTKKKGE KRQREPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR 180 SYYKCTTQKC TVKKRVERSF QDPSIVITTY EGQHNHPIPV TLRGNTAAMF SHSMFTPAPM 240 ETTRPVIFPQ DILVQMAPHL SNQAGANSTY PQILNDQHLY DHQYHHQVPE YGLVQDIVPS 300 MFFKQEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-29 | 149 | 220 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-29 | 149 | 220 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G118300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827595 | 0.0 | KT827595.1 Manihot esculenta WRKY transcription factor 20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593513.1 | 0.0 | probable WRKY transcription factor 28 | ||||
Swissprot | Q8VWJ2 | 2e-73 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A140H8M4 | 0.0 | A0A140H8M4_MANES; WRKY transcription factor 20 | ||||
STRING | cassava4.1_012482m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 4e-60 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G118300.1.p |
Publications ? help Back to Top | |||
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