PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G114300.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 787aa MW: 90306.7 Da PI: 6.7187

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G114300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.5	1.7e-31	79	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel Manes.15G114300.2.p 79 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHEL 168 9*************************************998888545677889********************************* PP FAR1 90 ap 91 +p Manes.15G114300.2.p 169 VP 170 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-30	79	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-33	291	383	IPR018289	MULE transposase domain
Pfam	PF04434	3.7E-12	559	605	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	571	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MENEVLEFDI GLGGASGGVD DDAVDIEHPV DDEDMPDTPT TVSFTGAGSG EIFLPEGDLL 60 DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL 120 NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VREHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD 240 IQLLLDYLRQ MHNDNPNFFY AVQGDEEQYT GNVFWADPKA RTNYTYFGDT VTFDTTYRSN 300 RYRLPFAPFT GVNHHGQPVL FGCAFLINET EASFVWLFNT WLMAMSGRHP VSITTDHDAV 360 IRSAIMQVFP DTRHRFCKWH IFKKCQEKLS HVFLKHPNFE AEFHKCVNLT ESIEEFESCW 420 LSLLDRYDLQ DHEWLQTIYS ARRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN 480 LNQFFKLYEK SLESRNEKEV KADYDTMNTS PVLKTPSPME KQASELYTRK LFMRFQEELV 540 GTLTFMASKA EDDGENITYQ VAKFGEDHKA YYVKFNVLEM KATCSCQMFE FSGLLCRHVL 600 AVFRVTNVLT LPSHYILKRW TRNARSSVIL EERSADVYTN YLESHTVRYN TLRHEAFKFV 660 DEGCKSLDTY NAAVTALQEA AKRVALATKN ERRGSTVNGR GRGELASNGS RANYSSSNHL 720 GSSIQHLSED DMDKKVQELA NELEYANRKC EVYRANLLSV LKDIEDHKLQ LSIKVQNIKI 780 SMKDSI*

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MENEVLEFDI GLGGASGGVD DDAVDIEHPV DDEDMPDTPT TVSFTGAGSG EIFLPEGDLL  60
DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL  120
NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VREHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD  240
IQLLLDYLRQ MHNDNPNFFY AVQGDEEQYT GNVFWADPKA RTNYTYFGDT VTFDTTYRSN  300
RYRLPFAPFT GVNHHGQPVL FGCAFLINET EASFVWLFNT WLMAMSGRHP VSITTDHDAV  360
IRSAIMQVFP DTRHRFCKWH IFKKCQEKLS HVFLKHPNFE AEFHKCVNLT ESIEEFESCW  420
LSLLDRYDLQ DHEWLQTIYS ARRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN  480
LNQFFKLYEK SLESRNEKEV KADYDTMNTS PVLKTPSPME KQASELYTRK LFMRFQEELV  540
GTLTFMASKA EDDGENITYQ VAKFGEDHKA YYVKFNVLEM KATCSCQMFE FSGLLCRHVL  600
AVFRVTNVLT LPSHYILKRW TRNARSSVIL EERSADVYTN YLESHTVRYN TLRHEAFKFV  660
DEGCKSLDTY NAAVTALQEA AKRVALATKN ERRGSTVNGR GRGELASNGS RANYSSSNHL  720
GSSIQHLSED DMDKKVQELA NELEYANRKC EVYRANLLSV LKDIEDHKLQ LSIKVQNIKI  780
SMKDSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G114300.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594745.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9UF08	0.0	A0A2C9UF08_MANES; Uncharacterized protein
STRING	EMJ02154	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.15G114300.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]