PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G114300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 796aa MW: 91525 Da PI: 6.9646 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 100.5 | 1.7e-31 | 79 | 170 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel Manes.15G114300.1.p 79 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHEL 168 9***************************************998888545677889*********************************** PP FAR1 90 ap 91 +p Manes.15G114300.1.p 169 VP 170 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-30 | 79 | 170 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.8E-33 | 291 | 383 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 3.7E-12 | 559 | 605 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.251 | 571 | 607 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-9 | 582 | 609 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MENEVLEFDI GLGGASGGVD DDAVDIEHPV DDEDMPDTPT TVSFTGAGSG EIFLPEGDLL 60 DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF VCAKEGFRNL 120 NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VREHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD 240 IQLLLDYLRQ MHNDNPNFFY AVQGDEEQYT GNVFWADPKA RTNYTYFGDT VTFDTTYRSN 300 RYRLPFAPFT GVNHHGQPVL FGCAFLINET EASFVWLFNT WLMAMSGRHP VSITTDHDAV 360 IRSAIMQVFP DTRHRFCKWH IFKKCQEKLS HVFLKHPNFE AEFHKCVNLT ESIEEFESCW 420 LSLLDRYDLQ DHEWLQTIYS ARRQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN 480 LNQFFKLYEK SLESRNEKEV KADYDTMNTS PVLKTPSPME KQASELYTRK LFMRFQEELV 540 GTLTFMASKA EDDGENITYQ VAKFGEDHKA YYVKFNVLEM KATCSCQMFE FSGLLCRHVL 600 AVFRVTNVLT LPSHYILKRW TRNARSSVIL EERSADVYTN YLESHTVRYN TLRHEAFKFV 660 DEGCKSLDTY NAAVTALQEA AKRVALATKN ERRGSTVNGR GRGELASNGS RANYSSSNHL 720 GSSIQHLSEC ATERFHKYSK CLAFTSETNS DASVFLFHSQ QSCWMIWTRR SKNLPMNWSM 780 QIESVKFTEL TYFQS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G114300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594744.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2C9UFA5 | 0.0 | A0A2C9UFA5_MANES; Uncharacterized protein | ||||
STRING | EMJ02154 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G114300.1.p |
Publications ? help Back to Top | |||
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