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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G108400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 32691.7 Da PI: 8.7537 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr++ +g+WvAeI+d + ++ r +lg+f+taeeAa+a+++a+ l+g Manes.15G108400.1.p 38 SKFVGVRQRA-SGKWVAEIKDTT---QKIRMWLGTFDTAEEAARAYDEAACLLRG 88 79*****999.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-19 | 38 | 97 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.95E-32 | 38 | 95 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 38 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.309 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-28 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MLTRNRDMEY QSKKKPRAVS PDKKSKFKER STTNNGKSKF VGVRQRASGK WVAEIKDTTQ 60 KIRMWLGTFD TAEEAARAYD EAACLLRGSN TRTNFTTHVP TNSPISIKLR NLLNHKKILK 120 QNCPANTTSK TNIEASTMVS TRSSINSSCE NFLFSNCSNS FQSGNNNLDS LCTGVKQENY 180 QMSDDVYRPG LSGGAGGLGL ADSSQFYYSS WPFSTGFDQL PLMQEGMNLP KKFGLLPAVN 240 ELELAEFEGM KVEREVSAAA YAMTGVNDYL VNTNYDPSDT LWDVPTLSHL FCPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G108400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021594637.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2C9UFX6 | 0.0 | A0A2C9UFX6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021815m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-50 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G108400.1.p |