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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Manes.15G103200.2.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
C3H |
| Protein Properties |
Length: 229aa MW: 24012 Da PI: 8.7013 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.15G103200.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.5 | 3.1e-10 | 33 | 58 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck+Gd+C+FaHg+
Manes.15G103200.2.p 33 KTRLCNKYNTAEGCKFGDKCHFAHGE 58
9***********************96 PP
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| 2 | zf-CCCH | 38 | 2.8e-12 | 195 | 219 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +GdrC+FaHg
Manes.15G103200.2.p 195 FKTKLCENFAK-GSCTFGDRCHFAHG 219
69*********.*************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-14 | 29 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-8 | 30 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.3E-4 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.591 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-7 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 2.05E-15 | 94 | 174 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 4.4E-12 | 101 | 171 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 9.6E-16 | 102 | 173 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 13.858 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 3.2E-11 | 104 | 168 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 2.76E-14 | 104 | 166 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 9.4E-17 | 193 | 226 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.45E-9 | 194 | 224 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 194 | 220 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.197 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.0E-10 | 195 | 219 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MLNLGGNPSL PPASRNAGVP PSFPDGSSPP ALKTRLCNKY NTAEGCKFGD KCHFAHGEWE 60
LGKPTGPSYE DPRSIGPISG RMGRQMEPPH QGFGAASSFG ASATAKISIN ASLAGAIIGK 120
NGVNSKQICR LTGAKLSIRD HETDPNLRNI ELEGTFDQID QASAMVRELI GNVSQGSGPP 180
IKNAAIHSSG PANNFKTKLC ENFAKGSCTF GDRCHFAHGT EELRKPGL*
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