PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G102800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 372aa    MW: 42235.6 Da    PI: 8.6554
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G102800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31.1e-095197254
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                         ++kGV    ++g W A+I+       + +r++lgkf + +eAa a++ a+ +l+
  Manes.15G102800.1.p 51 KFKGVV-SQQNGHWGAQIYA------NhQRIWLGKFKSDKEAAMAYDSAAINLR 97
                         799996.45589*****999......44***********************998 PP
2B386.42.5e-27184281184
                          EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                          f+k+ltpsdv++++rlv+pk+fa ++              +g ++e+++l+++d+  + W+++++y+++s+++v+t+GW +Fvk+++Lke
  Manes.15G102800.1.p 184 FQKELTPSDVGTLNRLVIPKRFAIKYfpcitgnmeeddngEGGEREDTELVFYDRLMKCWKFRYCYWRSSQSFVFTRGWIRFVKEKNLKE 273
                          99********************************99999966678999****************************************** PP

                          T-EEEEEE CS
                   B3  77 gDfvvFkl 84 
                          +D+v+F+ 
  Manes.15G102800.1.p 274 KDVVTFYA 281
                          ******94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-1750108No hitNo description
PROSITE profilePS5103215.52751106IPR001471AP2/ERF domain
PfamPF008471.9E-55197IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1251107IPR016177DNA-binding domain
SMARTSM003808.2E-1451112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-1451106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.5E-31181281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-26182281IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-27183280No hitNo description
PROSITE profilePS5086311.505184305IPR003340B3 DNA binding domain
SMARTSM010191.2E-18184291IPR003340B3 DNA binding domain
PfamPF023622.9E-24184281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MYQEDACSCL LSNAKINAAE TSDSCDSFYN PFRLAKRPRL DLNNNITVAA KFKGVVSQQN  60
GHWGAQIYAN HQRIWLGKFK SDKEAAMAYD SAAINLRSGD SQRNLPWTER NIQEPNFQSQ  120
YSIEVILSMI KDGSYQPKFS DFLRKQSRRQ EAAAAAGLSL NNNINNNQTG VPSGDGQFSC  180
IQLFQKELTP SDVGTLNRLV IPKRFAIKYF PCITGNMEED DNGEGGERED TELVFYDRLM  240
KCWKFRYCYW RSSQSFVFTR GWIRFVKEKN LKEKDVVTFY ACVSPEIQRV QEGHQFSLID  300
ISYSNGGQSC SVGDGPCEID EMQKELELNL GQTVGKKLQK DHQAKGNRKR GLELNNTAKG  360
KRLRLFGVRI D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2618327913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G102800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593463.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-102RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2C9UEK10.0A0A2C9UEK1_MANES; Uncharacterized protein
STRINGcassava4.1_021579m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-95RAV family protein