PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G078700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 510aa    MW: 56939.5 Da    PI: 6.2681
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G078700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.96.8e-1131615081373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++c +a+++++ +  ++l+ + +  +s  g+p+qRl ay++e+L ar   s++++y+al+++e +   s + l+++++++e++P+
  Manes.15G078700.1.p 161 LKQLLIACPKALAKNNINDFDKLIGKARIAVSIGGEPIQRLGAYLVEGLVARKELSGNNIYRALRCREPE---SNDLLSYMRILYEICPY 247
                          689***************************************************9**************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefn 179
                          lkf+++taN aI ea +++er+HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p               +k A+e+ gvp  f 
  Manes.15G078700.1.p 248 LKFGYMTANGAIAEACKNDERIHIIDFQIAQGTQWITLLQALAAKPDGAPHVRITGIDDPV--------------NKHAREFhGVP-VFA 322
                          ***********************************************************54..............34455431233.355 PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          +       d+++++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+Pk v++veqe+++n+++Fl+rf+e+l+yy a+f+
  Manes.15G078700.1.p 323 P-------DVTPDMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLNPKAVTLVEQESNTNTTPFLTRFIETLDYYLAMFE 405
                          5.......99******************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s+ ++lpr++++ri vE+++l+++ivnv+aceg+er+erhe ++kW++rl +aGF+++pls+++++ +++llr ++ + y++ e++g+++
  Manes.15G078700.1.p 406 SIVVTLPRDQKDRIGVEQHCLAKDIVNVIACEGKERVERHELFGKWKSRLIMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAML 494
                          ************************************************************************9999.66*********** PP

                 GRAS 360 lgWkdrpLvsvSaW 373
                          lgWk+r+L+s+SaW
  Manes.15G078700.1.p 495 LGWKNRNLISASAW 508
                          ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.441135490IPR005202Transcription factor GRAS
PfamPF035142.3E-110161508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MESHQLFGYS VTGNSPSSPF SNHFDCDTIT TLSDSREHPS CNSSLEPGNH FHQLSPTLLQ  60
DANSSQNVKY TLLQLETALM APDDEDITMS DTSLGESSRP QTSGQTTRAW SQDHHGSCVI  120
QPRQRPSVVS GQRQSDEGAL IEEHQKQMEE AKFQSIPPGN LKQLLIACPK ALAKNNINDF  180
DKLIGKARIA VSIGGEPIQR LGAYLVEGLV ARKELSGNNI YRALRCREPE SNDLLSYMRI  240
LYEICPYLKF GYMTANGAIA EACKNDERIH IIDFQIAQGT QWITLLQALA AKPDGAPHVR  300
ITGIDDPVNK HAREFHGVPV FAPDVTPDML DIRPGEALAV NFPLQLHHTP DESVDVSNPR  360
DGLLRMVKSL NPKAVTLVEQ ESNTNTTPFL TRFIETLDYY LAMFESIVVT LPRDQKDRIG  420
VEQHCLAKDI VNVIACEGKE RVERHELFGK WKSRLIMAGF RQYPLSSYVN SVIRSLLRCY  480
SEHYTLVEKD GAMLLGWKNR NLISASAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-541635086374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G078700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595372.10.0chitin-inducible gibberellin-responsive protein 1-like isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2C9UFW20.0A0A2C9UFW2_MANES; Uncharacterized protein
STRINGcassava4.1_004650m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-158SCARECROW-like 21
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]