PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G078400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 453aa    MW: 50653.7 Da    PI: 6.3279
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G078400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.72.5e-128824511373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+++++ +  ++l+ + +  +s  g+p+qRl ay++e+L ar   s++++y+al+++e +   s + l+++++++e++P+
  Manes.15G078400.1.p  82 LKQLLIACAKALAENNINDFDKLIGKARIAVSIGGEPIQRLGAYLVEGLVARKELSGNNIYRALRCREPE---SNDLLSYMRILYEICPY 168
                          689***************************************************9**************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf+++taN aI ea +++er+HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p ++  + + le++++rLa + e++++p+ef
  Manes.15G078400.1.p 169 LKFGYMTANGAIAEACKNDERIHIIDFQIAQGTQWITLLQALAAKPDGAPHVRITGIDDPVNKhaRGDGLEAVHRRLAAISEKFNIPVEF 258
                          ***********************************************************99988999*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v     d+++++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+Pk v++veqe+++n+++Fl+rf+e+l+yy a+f
  Manes.15G078400.1.p 259 HG-VPVFAPDVTPDMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLNPKAVTLVEQESNTNTTPFLTRFIETLDYYLAMF 347
                          **.688899********************************************************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s+ ++lpr++++ri vE+++l+++ivnv+aceg+er+erhe ++kW++rl +aGF+++pls+++++ +++llr ++ + y++ e++g++
  Manes.15G078400.1.p 348 ESIVVTLPRDQKDRIGVEQHCLAKDIVNVIACEGKERVERHELFGKWKSRLIMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAM 436
                          *************************************************************************9999.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWk+r+L+s+SaW
  Manes.15G078400.1.p 437 LLGWKNRNLISASAW 451
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.08856433IPR005202Transcription factor GRAS
PfamPF035148.7E-12682451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAPDDEDITM SDTSLGESSR PQTSGQTTRA WSQDHHGSCV IQPRQRPSVV SGQRQSDEDA  60
LIEEHQKQME EAKFQSIPPG NLKQLLIACA KALAENNIND FDKLIGKARI AVSIGGEPIQ  120
RLGAYLVEGL VARKELSGNN IYRALRCREP ESNDLLSYMR ILYEICPYLK FGYMTANGAI  180
AEACKNDERI HIIDFQIAQG TQWITLLQAL AAKPDGAPHV RITGIDDPVN KHARGDGLEA  240
VHRRLAAISE KFNIPVEFHG VPVFAPDVTP DMLDIRPGEA LAVNFPLQLH HTPDESVDVS  300
NPRDGLLRMV KSLNPKAVTL VEQESNTNTT PFLTRFIETL DYYLAMFESI VVTLPRDQKD  360
RIGVEQHCLA KDIVNVIACE GKERVERHEL FGKWKSRLIM AGFRQYPLSS YVNSVIRSLL  420
RCYSEHYTLV EKDGAMLLGW KNRNLISASA WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-608945226379Protein SCARECROW
5b3h_A9e-608945225378Protein SCARECROW
5b3h_D9e-608945225378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G078400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594470.10.0chitin-inducible gibberellin-responsive protein 1-like, partial
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2C9UDW50.0A0A2C9UDW5_MANES; Uncharacterized protein
STRINGcassava4.1_004650m0.0(Manihot esculenta)
STRINGcassava4.1_009548m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-172GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]