PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G078300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 563aa    MW: 62653.7 Da    PI: 5.8343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G078300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.2e-1291925611373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+++++ +  ++l+ + +  +s  g+p+qRl ay++e+L ar   s++++y+al+++e +   s + l+++++++e++P+
  Manes.15G078300.1.p 192 LKQLLIACAKALAENNINDFDKLIGKARIAVSIGGEPIQRLGAYLVEGLVARKELSGNNIYRALRCREPE---SNDLLSYMRILYEICPY 278
                          689***************************************************9**************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI ea +++er+HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p ++  + + le++++rLa + e++++p+ef
  Manes.15G078300.1.p 279 LKFGYMAANGAIAEACKNDERIHIIDFQIAQGTQWITLLQALAAKPDGAPHVRITGIDDPVNKhaRGDGLEAVHRRLAAISEKFNIPIEF 368
                          ***********************************************************99988999*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v     d+++++L+++pgEalaVn+ lqlh+++desv+++++rd +L++vksl+Pkvv++veqe+++n+++Fl+rf+e+l+yy a+f
  Manes.15G078300.1.p 369 HG-VPVFAPDVTPDMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLNPKVVTLVEQESNTNTTPFLTRFIETLDYYLAMF 457
                          **.688899********************************************************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+++eri vE+++l+++ivnv+aceg+er+erhe ++kW++rl +aGF+++pls+++++ +++llr ++ + y++ e++g++
  Manes.15G078300.1.p 458 ESIDVTLPRDQKERIGVEQHCLAKDIVNVIACEGKERVERHELFGKWKSRLIMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAM 546
                          *************************************************************************9999.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWk+r+L+s+SaW
  Manes.15G078300.1.p 547 LLGWKNRNLISASAW 561
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.822166543IPR005202Transcription factor GRAS
PfamPF035147.5E-127192561IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MESHQLFGYS VTGAGLSYSS SYQISPSIPN RFFGSFKFDI GNSPSSPFSN HFDCDTITTL  60
SDSREQYSTT DNLSGASPSC NSSLESGNHF HQLSPTLLQD ANSSQNVKYT LLQLETALMA  120
PDDEDITMSD TSLGESSRPQ TSGQTTRAWS QDHHGSCVIQ PRQRQSDEGA LIEEHQKQME  180
EAKFQSIPPG NLKQLLIACA KALAENNIND FDKLIGKARI AVSIGGEPIQ RLGAYLVEGL  240
VARKELSGNN IYRALRCREP ESNDLLSYMR ILYEICPYLK FGYMAANGAI AEACKNDERI  300
HIIDFQIAQG TQWITLLQAL AAKPDGAPHV RITGIDDPVN KHARGDGLEA VHRRLAAISE  360
KFNIPIEFHG VPVFAPDVTP DMLDIRPGEA LAVNFPLQLH HTPDESVDVS NPRDGLLRMV  420
KSLNPKVVTL VEQESNTNTT PFLTRFIETL DYYLAMFESI DVTLPRDQKE RIGVEQHCLA  480
KDIVNVIACE GKERVERHEL FGKWKSRLIM AGFRQYPLSS YVNSVIRSLL RCYSEHYTLV  540
EKDGAMLLGW KNRNLISASA WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-601945626375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G078300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595370.10.0scarecrow-like protein 21 isoform X1
RefseqXP_021595371.10.0scarecrow-like protein 21 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2C9UE600.0A0A2C9UE60_MANES; Uncharacterized protein
STRINGcassava4.1_004650m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]