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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G066900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25825.9 Da PI: 9.7673 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 30 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g Manes.15G066900.1.p 30 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 80 68********.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-14 | 30 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.89E-18 | 30 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 31 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 31 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.985 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-11 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRRGRGAAAP KQVVEPNGSA PQNIVNGKEP RYRGVRKRPW GRFAAEIRDP WKKTRVWLGT 60 FDSAEDAARA YDAAARSLRG PKAKTNFISD SHLSPFTYQN PPHPFMDHRL YTSNGFHEHH 120 VIPQRPASSS QSSTVESFSG PRPPAQQTTT ATKKSKLPLA ATAPRKNHHR TPPMVPEDCH 180 SDCDSSSSVV DDRDIASSSS LSCRKPLPFD LNFPPLDQVD FVIDDLQCTA LCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-20 | 25 | 87 | 8 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G066900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595894.1 | 1e-173 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 2e-59 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A2C9UEP1 | 1e-172 | A0A2C9UEP1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_015279m | 1e-173 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 3e-34 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G066900.1.p |
Publications ? help Back to Top | |||
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