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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G053900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 437aa MW: 48396.3 Da PI: 5.8681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 259 | 307 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Manes.15G053900.1.p 259 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYMLRG 307 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.16E-31 | 257 | 317 | No hit | No description |
PROSITE profile | PS51032 | 22.418 | 258 | 315 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 258 | 316 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 258 | 316 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-35 | 258 | 321 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 259 | 270 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-13 | 259 | 307 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 281 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEDQFPKMET FMHKDYSFHG MATASKYFDD PIIWGAPTEA ATCGDNGTSG LKSTASSPER 60 FLSSSDSCSS AEEASGTICN IPGFVKPDVT KQNHASSFLS GLSSINPSSG ASLSDIKESS 120 IPVDFLESFP KINQTHQVSE PSSPSKFPNL TLFLQEPSLL DPSKQPITCS LLSENQRLEP 180 MLLFPNTSFS MPQLEKIHCS PSEEWLKINQ TLTDYPTKGF NDYWLSTTKT QPMKCTGRRL 240 QNQQQKSSLS STSAPGKLFR GVRQRHWGKW VAEIRLPRNR TRVWLGTFDT AEEAAIAYDT 300 AAYMLRGDYA HLNFPDLKHQ LKANSSNGAT AALLEAKLQA ISQGITGQKK QNIDPPLTSP 360 NKHVYENNTK LKGLGQNPSR KEWQFQLESE VGFDGEMNEN KKAQEAVESE MDGVQLSRMP 420 SLDMDMIWDA LLVSDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 254 | 325 | 1 | 68 | ATERF1 |
3gcc_A | 6e-21 | 254 | 325 | 1 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G053900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595908.1 | 0.0 | ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A2C9UDB9 | 0.0 | A0A2C9UDB9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023072m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 2e-75 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G053900.1.p |