PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G039600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 163aa    MW: 18420.1 Da    PI: 8.8525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G039600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.9e-212172256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +g+++AeIrdp+  g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Manes.15G039600.1.p 21 RYRGVRRRP-WGKFAAEIRDPTRHG--ARLWLGTFDTAEEAARAYDKAAFNLRGH 72
                         6********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-242180IPR016177DNA-binding domain
PfamPF008473.6E-152172IPR001471AP2/ERF domain
SMARTSM003807.3E-362185IPR001471AP2/ERF domain
PROSITE profilePS5103224.9612179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-322180IPR001471AP2/ERF domain
CDDcd000186.65E-282179No hitNo description
PRINTSPR003671.0E-112233IPR001471AP2/ERF domain
PRINTSPR003671.0E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEGPSNNRGK DKEEKGGEEV RYRGVRRRPW GKFAAEIRDP TRHGARLWLG TFDTAEEAAR  60
AYDKAAFNLR GHLATLNFPS EYYPRVMGFS PRPPHQSFSS SSSSSSSSFS STSTNNVASQ  120
SSERGSSSGR QERQVFEFEY LDDKVLEELL ESEEEKKKRR QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-34161459114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G039600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595935.11e-115ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-54ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2C9UCW61e-113A0A2C9UCW6_MANES; Uncharacterized protein
STRINGcassava4.1_033136m1e-114(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]