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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.15G039600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18420.1 Da PI: 8.8525 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 6.9e-21 | 21 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ g +r +lg+f+taeeAa+a+++a+ +l+g+ Manes.15G039600.1.p 21 RYRGVRRRP-WGKFAAEIRDPTRHG--ARLWLGTFDTAEEAARAYDKAAFNLRGH 72 6********.**********96544..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-24 | 21 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-15 | 21 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-36 | 21 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.961 | 21 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-32 | 21 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.65E-28 | 21 | 79 | No hit | No description |
PRINTS | PR00367 | 1.0E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEGPSNNRGK DKEEKGGEEV RYRGVRRRPW GKFAAEIRDP TRHGARLWLG TFDTAEEAAR 60 AYDKAAFNLR GHLATLNFPS EYYPRVMGFS PRPPHQSFSS SSSSSSSSFS STSTNNVASQ 120 SSERGSSSGR QERQVFEFEY LDDKVLEELL ESEEEKKKRR QD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-34 | 16 | 145 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 159 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.15G039600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595935.1 | 1e-115 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 1e-54 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2C9UCW6 | 1e-113 | A0A2C9UCW6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033136m | 1e-114 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 8e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.15G039600.1.p |
Publications ? help Back to Top | |||
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