PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.15G032900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 360aa    MW: 41299.5 Da    PI: 5.1185
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.15G032900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35421332102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+i+ed ++++++sws+ +nsfvv+d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++  F +g+k
  Manes.15G032900.1.p  42 FLTKTYDIVEDTATNHIVSWSRGNNSFVVWDPQTFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANGGFLRGQK 122
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Manes.15G032900.1.p 123 HLLKDIRRRKA 133
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3836126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-6038131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3538131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNHDLGQVKE EYAGASSSYS GMASTAIPQP MEGLHDAGPP PFLTKTYDIV EDTATNHIVS  60
WSRGNNSFVV WDPQTFSMSL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANGGFLRG  120
QKHLLKDIRR RKAPQPQSCQ QCLDPCVEVE RFGVDGEVDR LRRDKQVLMM ELLKLRQQQQ  180
NTKACLQLME HKLKRTETKQ QQLMGFLPRA IQNPNFVQKL IQQKDRRKEL EEAFNKKRRG  240
PIDQGHNNVK FRDFDHIGGD VDTCIKIELQ EFDDLPDFEA SELGALAMTL QDVSGSQQNL  300
EEECKERGEE HKDKGKDLDE GFWDELLNQD IGDEMVMCGE AEDVDVLVEQ LVYLGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-243713112120Heat shock factor protein 1
5d5u_B9e-24201315129Heat shock factor protein 1
5d5v_B9e-24201315129Heat shock factor protein 1
5d5v_D9e-24201315129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.15G032900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595803.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-134HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2C9UCC70.0A0A2C9UCC7_MANES; Uncharacterized protein
STRINGcassava4.1_010467m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-134heat shock transcription factor A6B