PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.15G020900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 639aa MW: 73948.9 Da PI: 7.6924

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G020900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.7	1.2e-20	71	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA +GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k++++g+w v++l+++HnH+l Manes.15G020900.1.p 71 QFYQIYADGAGFRIRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQESGTWIVDRLQKDHNHNL 145 6*************************************999..............4899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-16	71	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-28	250	341	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	524	560	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-8	533	557	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-8	535	562	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
SSAEVSQTPK LKLTEVSQRP KFKLIEDVDN GHPCPSGVIN VKRFKRGGDE GQFEAEPYAG 60 LVFNSVDEAY QFYQIYADGA GFRIRIGQLF RSKNDGSITS RRFVCSKEGF QHPSRVGCGA 120 FMRIKRQESG TWIVDRLQKD HNHNLDLQTG THQKSYNVSK KFMDNVNGDE NGGLDSLDVA 180 KVTYGSPIRR ARENNIASDW YQLLLDYFQT RQAEDTGFFY SVETDNGSCM SLFWADGRSR 240 FSCSQFGDAI VFDTSFRKSN YLVPFASFVG VNHHKQPVLL ACALIANISE ESFTWLFQTW 300 LRAMSGCRPK CIIADQDVAI QQAIMKVFPR THHRFSMWQI RAMEQENLRS MTEEFKCEYE 360 KCIYQSQTSV EFNTTWSALI NRYALKENAW LREMSEKRES WVPLFLRGKF CAGIPINESL 420 EPFFGTLLNA QTPIEEFISR FERGLARRHD EERKEDFNSY NLQAFLHTKE PVEEQCRRLY 480 TLTVFKIFQN ELLQCYNYLG IKTYEEGTIS RYSVRRCGNE IEKHAVTFSA SNITACCSCQ 540 MFEFEGILCR HILRVFNLLD IREIPPCYIL HRWTKNAEYG TVRDIESGVS PQELKSLIMW 600 SLRETACKFI EAGTTSLEKY KMAYEIMREG GIKLHWQR*

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

SSAEVSQTPK LKLTEVSQRP KFKLIEDVDN GHPCPSGVIN VKRFKRGGDE GQFEAEPYAG  60
LVFNSVDEAY QFYQIYADGA GFRIRIGQLF RSKNDGSITS RRFVCSKEGF QHPSRVGCGA  120
FMRIKRQESG TWIVDRLQKD HNHNLDLQTG THQKSYNVSK KFMDNVNGDE NGGLDSLDVA  180
KVTYGSPIRR ARENNIASDW YQLLLDYFQT RQAEDTGFFY SVETDNGSCM SLFWADGRSR  240
FSCSQFGDAI VFDTSFRKSN YLVPFASFVG VNHHKQPVLL ACALIANISE ESFTWLFQTW  300
LRAMSGCRPK CIIADQDVAI QQAIMKVFPR THHRFSMWQI RAMEQENLRS MTEEFKCEYE  360
KCIYQSQTSV EFNTTWSALI NRYALKENAW LREMSEKRES WVPLFLRGKF CAGIPINESL  420
EPFFGTLLNA QTPIEEFISR FERGLARRHD EERKEDFNSY NLQAFLHTKE PVEEQCRRLY  480
TLTVFKIFQN ELLQCYNYLG IKTYEEGTIS RYSVRRCGNE IEKHAVTFSA SNITACCSCQ  540
MFEFEGILCR HILRVFNLLD IREIPPCYIL HRWTKNAEYG TVRDIESGVS PQELKSLIMW  600
SLRETACKFI EAGTTSLEKY KMAYEIMREG GIKLHWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G020900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021594355.1	0.0	protein FAR1-RELATED SEQUENCE 7-like, partial
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2C9UCE5	0.0	A0A2C9UCE5_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_001903m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Manes.15G020900.1.p

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]