PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GATA

Protein Properties

Length: 143aa MW: 15546.5 Da PI: 10.4429

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.15G007100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.1	5.9e-19	29	63	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ Manes.15G007100.1.p 29 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 63 ********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	1.19E-12	23	62	No hit	No description
SMART	SM00401	2.3E-14	23	75	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.466	23	59	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.3E-15	27	63	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.52E-12	28	63	No hit	No description
Pfam	PF00320	6.7E-17	29	63	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	29	54	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MMDPLEKGSE NEDTSSRSSE GENQQKKTCA DCGTSKTPLW RGGPAGPKSL CNACGIRSRK 60 KRRDNLALNR AGNEKKAKKG NNHHSSSNNS NKLGDGLKQR LLALGREVLM QRSTVEKQRR 120 KLGEEEQAAV LLMALSYGSV YA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00335	DAP	Transfer from AT3G06740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.15G007100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593720.1	1e-100	GATA transcription factor 15-like
Swissprot	Q8LG10	2e-50	GAT15_ARATH; GATA transcription factor 15
TrEMBL	A0A2C9UBK2	2e-98	A0A2C9UBK2_MANES; Uncharacterized protein
STRING	cassava4.1_018669m	3e-99	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1569	32	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	2e-48	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Manes.15G007100.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982]