PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G161900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 386aa    MW: 44411.5 Da    PI: 8.1108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G161900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.6e-50301552128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  Manes.14G161900.1.p  30 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 118
                          79***************************.89***************8778899************************************ PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Manes.14G161900.1.p 119 IRTENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 155
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-5628175IPR003441NAC domain
PROSITE profilePS5100555.82229176IPR003441NAC domain
PfamPF023654.8E-2531155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNLVTNDNST TTVNATVSTT KDNHEHDMVM PGFRFHPTEE ELVEFYLRRK VEGKRFNVEL  60
ITFLDLYRYD PWELPALAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
TENSRSIGLK KTLVFYSGKA PKGIRTSWIM NEYRLPQHET EKYQKAEISL CRVYKRAGVE  180
DHPSLPRSLL SRGSQSDKKH PHQLSMERFQ PYGGGIQSEQ IEMEKMRERD GSSSSDVTTA  240
LGISNTTNTY HPVPPISTSL GLPTAMEEEI FSDQYRQACS LVPSNTNLFT GGPSSASSNQ  300
VDDLHRLVNY QQACRSNQQQ QQRLQHYTQH HHQQPSPFSV MAPQSQTLPF NVLTNSLPTA  360
FQERLWDWNQ MPEENKEYNA SSQFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-563117619165NO APICAL MERISTEM PROTEIN
1ut4_B7e-563117619165NO APICAL MERISTEM PROTEIN
1ut7_A7e-563117619165NO APICAL MERISTEM PROTEIN
1ut7_B7e-563117619165NO APICAL MERISTEM PROTEIN
3swm_A8e-563117622168NAC domain-containing protein 19
3swm_B8e-563117622168NAC domain-containing protein 19
3swm_C8e-563117622168NAC domain-containing protein 19
3swm_D8e-563117622168NAC domain-containing protein 19
3swp_A8e-563117622168NAC domain-containing protein 19
3swp_B8e-563117622168NAC domain-containing protein 19
3swp_C8e-563117622168NAC domain-containing protein 19
3swp_D8e-563117622168NAC domain-containing protein 19
4dul_A7e-563117619165NAC domain-containing protein 19
4dul_B7e-563117619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G161900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051910.0KR605191.1 Manihot esculenta NAC transcription factors 53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634470.10.0NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-114NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A0M3R8590.0A0A0M3R859_MANES; NAC transcription factors 53
STRINGcassava4.1_023803m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-108NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]