PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G158400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 248aa    MW: 28238.2 Da    PI: 4.7506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G158400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-135799754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Manes.14G158400.1.p 57 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                         57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6985099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1851114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-1353104No hitNo description
Gene3DG3DSA:4.10.280.104.3E-1756114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEPIENIGDE YQNYWETKMF FQNEELDSWA MDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH EQERRIQAEI MELESGKLKT  120
NPARYDEFEQ ELPVLLRSKK KKIDQFYDSG GSRSCPIEVL ELNVAYMAEK TLVVSLTCSK  180
RTDTMVKLCE VFESLKLKII TANITTVSGR LLKTLFIEAD EEEKDHLKIK IETAIAALND  240
PQSPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1455119966Transcription factor MYC2
5gnj_B7e-1455119966Transcription factor MYC2
5gnj_E7e-1455119966Transcription factor MYC2
5gnj_F7e-1455119966Transcription factor MYC2
5gnj_G7e-1455119966Transcription factor MYC2
5gnj_I7e-1455119966Transcription factor MYC2
5gnj_M7e-1455119966Transcription factor MYC2
5gnj_N7e-1455119966Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G158400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634035.10.0transcription factor bHLH35-like isoform X4
SwissprotQ2HIV92e-95BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2C9UP100.0A0A2C9UP10_MANES; Uncharacterized protein
STRINGcassava4.1_015716m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-88bHLH family protein