PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G126300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 442aa    MW: 47871.7 Da    PI: 5.0812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G126300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31228286259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Manes.14G126300.1.p 228 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 286
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-31221288IPR003657WRKY domain
PROSITE profilePS5081133.109222288IPR003657WRKY domain
SuperFamilySSF1182902.88E-26225288IPR003657WRKY domain
SMARTSM007741.4E-37227287IPR003657WRKY domain
PfamPF031069.3E-26229286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDNYHGDLTD IVRGSAGGLC QSDAPVSNWE FPSDPLNLSF SSSSAAMEDT RDNVFGDPFC  60
NMRDPLLHEL NVAASSGYFS SPNSTGRVLS SSPDDTSNDF SRANASNILA HKVFEEEMNK  120
NPCNIFSRIQ ISQKNPTKLP VSPCNSPVIA AAAAASSPRG FKASSMVSID MINTNSSKTC  180
LIDNAGPVQI SSPRNLGIKR RKSQAKKVVC IPAPAAANSR SSGEVVPSDL WAWRKYGQKP  240
IKGSPYPRGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT SEHNHPWPTQ RNALAGSTRS  300
QPPKNNAGGS KSSLSSQPQN SANAKEEQKE NSNDTLSPTM LGGSSTSSAP VKEETEDVEK  360
QMEVDDTDRF SEGFPQSYRP AMPAECNQSE DFFSDLGEIE ADPLDLLFSQ GFNGDEQKEG  420
KALDPFGFFD WSEDINTNRG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25202289280Disease resistance protein RRS1
5w3x_D2e-25202289280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G126300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276320.0KT827632.1 Manihot esculenta WRKY transcription factor 57 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634766.10.0probable WRKY transcription factor 14
TrEMBLA0A140H8R10.0A0A140H8R1_MANES; WRKY transcription factor 57
STRINGcassava4.1_030132m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-114WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]