PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.14G104100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 170aa MW: 19123.8 Da PI: 9.3021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.5e-09 | 64 | 111 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq Manes.14G104100.1.p 64 SHSLAERVRREKINEKLRHLQDLVPGC----YKTMGMAVMLDVIIHYVQSLQ 111 8*************************8....344777888888888888887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.22E-11 | 58 | 115 | No hit | No description |
SuperFamily | SSF47459 | 1.23E-16 | 58 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.939 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 60 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-6 | 64 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-8 | 66 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MNFASNIQGL VPVSPTTPAV PGTGLSENIK SFGGRKRKRK DEKELQKPTD VVHVRAKRGQ 60 ATDSHSLAER VRREKINEKL RHLQDLVPGC YKTMGMAVML DVIIHYVQSL QNQIEFLSMK 120 LSAASMYYDF NLDRDDIETM QGTNAYEVQE MGREGYGLPS NYFQSARPL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 34 | 39 | RKRKRK |
2 | 34 | 40 | RKRKRKD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.14G104100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633839.1 | 1e-124 | transcription factor bHLH75-like | ||||
Swissprot | A4D998 | 1e-52 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A2C9UK55 | 1e-124 | A0A2C9UK55_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025264m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25330.1 | 5e-55 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.14G104100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|