PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G097100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40735.6 Da PI: 6.2945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.3e-14 | 166 | 212 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Manes.14G097100.1.p 166 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 212 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-12 | 166 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-14 | 167 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 167 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-13 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.21E-5 | 176 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.6E-4 | 248 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MRGFKEEDQG ECSQTIHNFQ GYQEQLLLQH HLQMQQQQQQ QQQQSNDIYG GARGTGLIFP 60 EVSPILPWPL APVHSFNPTH FVSNPVREQD PFLIPPVPSS YGNLFNRRAP PLQFAYDGPS 120 SDHLRIISET LGPVVQPGSA AFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN 180 NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ETSPVPTEID ELTVDTSDED 240 GKFVIKASIC CEDRSDLLPD LIKTLKALRL RTLKAEITTL GGRVKNVLFI TGEEDSSSNS 300 NEQQQHEEAQ YSISSIQEAL KAVMEKTGGD ESSSGSTKRQ RTNINILDQQ HRNYGSCSVT 360 NVNTEK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 176 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G097100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634415.1 | 0.0 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-107 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2C9UJY5 | 0.0 | A0A2C9UJY5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010668m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 4e-88 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G097100.1.p |
Publications ? help Back to Top | |||
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