PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G083200.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 441aa    MW: 48495.5 Da    PI: 8.507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G083200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.66.9e-16240285555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Manes.14G083200.3.p 240 HNQSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 285
                          9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-19232296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18233295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.6235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-13240285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-16240289No hitNo description
SMARTSM003532.8E-17241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MIGQCTVPKW NLKHQRQAQV EGAESNRSTH VHTHQLQNPT THLGVPMSNY YEVAELTWEN  60
GQLAMHGLGG LLHSDQGTKA TTTWGRTSET LESIVHQATR HSSPQKINSK QQGQAKIASA  120
VESSDGKWAE TSSGHQAQMA PLLLKKRARS ESNQCGSSRD HEQVDRSACA SASPTFCRES  180
DTTMMTYASF ESTPSFKAKT TDNEDSASHG GSENPDEDRE TKTERVRSHS SRRSRAAAIH  240
NQSERKRRDR INQKMKALQK LVPNASKTDK ASMLDEVIEY LKQLQAQVQV MSVRNMPQMM  300
MSPLGMHQHF HQMSLLARMG MGVTHLGMGM GMLHDINTIG HATATPPHSL PPLLHPPPPS  360
TTPAASFVPP PHPHPFVVLP AANPDTANSS SVPLPDPYCG FLAQSMNMDL YNKMAALYQQ  420
QMMNQQMTQA APQPNHVQGD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149LKKRARS
2243248ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G083200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593101.10.0transcription factor PIF7 isoform X2
TrEMBLA0A2C9UJW80.0A0A2C9UJW8_MANES; Uncharacterized protein
STRINGcassava4.1_034399m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-42bHLH family protein