PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G080400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 359aa    MW: 40758.2 Da    PI: 7.4519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.2e-55161411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL kkv + +++  ++i +vd++k+ePw+Lp k+k + kewyfF+ rd+ky+tg r+nrat++gyWkatgkd+
  Manes.14G080400.1.p  16 LPPGFRFHPTDEELISHYLYKKVLDINFSS-RAIGDVDLNKSEPWELPWKAKMGVKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDR 104
                          79*************************999.89***************8889999*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrl
  Manes.14G080400.1.p 105 EIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 141
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6312166IPR003441NAC domain
PROSITE profilePS5100559.27916166IPR003441NAC domain
PfamPF023652.6E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MENISELVKE DDQMDLPPGF RFHPTDEELI SHYLYKKVLD INFSSRAIGD VDLNKSEPWE  60
LPWKAKMGVK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDREIYRGK SLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LDGKFSVHNL PKTAKNEWVI CRVFQKNSAG KKTYISGLAR  180
LGSFENELCP PDIPPLMDSS PYTGKTRLLT ESAYVPCFSN PIDVQRNQQQ SIDDFNNNLF  240
AVSSNPVDVF QRIPLANTFY SAQAVPFSAN LQYPGSVLIQ DHSILRALIE NQGLNLKQNF  300
KTERDMFSGS QETGLSTDMN TEISSVISNL EMGKRGFDPQ EAPSSLAGPV DLDCLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-5481726171NO APICAL MERISTEM PROTEIN
1ut4_B4e-5481726171NO APICAL MERISTEM PROTEIN
1ut7_A4e-5481726171NO APICAL MERISTEM PROTEIN
1ut7_B4e-5481726171NO APICAL MERISTEM PROTEIN
3swm_A4e-5481729174NAC domain-containing protein 19
3swm_B4e-5481729174NAC domain-containing protein 19
3swm_C4e-5481729174NAC domain-containing protein 19
3swm_D4e-5481729174NAC domain-containing protein 19
3swp_A4e-5481729174NAC domain-containing protein 19
3swp_B4e-5481729174NAC domain-containing protein 19
3swp_C4e-5481729174NAC domain-containing protein 19
3swp_D4e-5481729174NAC domain-containing protein 19
4dul_A4e-5481726171NAC domain-containing protein 19
4dul_B4e-5481726171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G080400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052000.0KR605200.1 Manihot esculenta NAC transcription factors 62 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634574.10.0NAC domain-containing protein 100-like
RefseqXP_021634575.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-164NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0M4FLR20.0A0A0M4FLR2_MANES; NAC transcription factors 62
STRINGcassava4.1_026590m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-167NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]