PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G067000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 180aa MW: 20397 Da PI: 10.1127 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.5e-10 | 13 | 64 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR +++ ++L +l+P+ +k ++ ls L +A YIk+L+ Manes.14G067000.1.p 13 RKTVERNRRIHMKGLCFKLASLIPShHFKHSKDMLSQQGQLDHAAAYIKHLK 64 6789*********************888877777****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.743 | 8 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-9 | 10 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 10 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0054 | 14 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-7 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.83E-5 | 16 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKKSISESSR PDRKTVERNR RIHMKGLCFK LASLIPSHHF KHSKDMLSQQ GQLDHAAAYI 60 KHLKERIEKL KKIKEQAMVI SGANNNKIMM GLRLPIVELR DLGSSIEVVL ISGLKKNFMM 120 YEVITIIEEE GAEVVSVSFS TVGDKVFHTI HAQVKICRVG VETSRVCQRL QELIDWSCI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G067000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634531.1 | 1e-129 | transcription factor bHLH162-like | ||||
TrEMBL | A0A2C9UKM1 | 1e-128 | A0A2C9UKM1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_017345m | 1e-128 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G067000.1.p |