PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G064900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 431aa    MW: 49357.5 Da    PI: 7.0726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G064900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-18177223148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd ll+++v+q+G + W+ Iar+++ gR +kqc++rw+++l
  Manes.14G064900.1.p 177 KGQWTIEEDRLLAQLVEQYGLRKWSHIARMLP-GRIGKQCRERWHNHL 223
                          799*****************************.*************97 PP
2Myb_DNA-binding53.26.9e-17231271345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W+++Ed+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Manes.14G064900.1.p 231 IWSEDEDKVLIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 271
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.205172227IPR017930Myb domain
SuperFamilySSF466892.62E-31174270IPR009057Homeodomain-like
SMARTSM007174.5E-16176225IPR001005SANT/Myb domain
PfamPF002493.8E-17177223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-27178231IPR009057Homeodomain-like
CDDcd001672.85E-15180223No hitNo description
PROSITE profilePS5129420.086228278IPR017930Myb domain
SMARTSM007179.1E-16228276IPR001005SANT/Myb domain
PfamPF002491.3E-15232271IPR001005SANT/Myb domain
CDDcd001671.72E-12232274No hitNo description
Gene3DG3DSA:1.10.10.603.5E-21232276IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MFISDNQSIK PSIKNGFPFE LPSLPSKGFL EDFHHFDQFY ANGLSLNPSF GVQSGCNFNS  60
FDAFPYGSST NMDFYDYECK PFADTNGGHG QVMDNFQSGR YLNLPESNPT DMMVSNQNNN  120
MSLNFQEVKP INFLVPDEVS CVSANHEYHK KVGLNKNRAS PSARRTWKGC KKNNLVKGQW  180
TIEEDRLLAQ LVEQYGLRKW SHIARMLPGR IGKQCRERWH NHLRPDIKKD IWSEDEDKVL  240
IQAHAEIGNK WAEIAKRLPG RTENSIKNHW NATKRRQYSK RKCRSKYPRG SLLQEYIKSL  300
NLDSVPGRYQ GTIKLKAKSS AAIDTTAVNM KARNQLQPQA ASNVFPNDNR SVPNCYDFNE  360
VPDFDFDEKL FQEGCSFDSL LDEIANCDHV VDEKSFEQMD AAVEDVNPLF MDFEVKKELD  420
LVEMISQSKM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-451752772104C-Myb DNA-Binding Domain
1msf_C4e-451752772104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G064900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346399e-75KM034639.1 Jatropha curcas clone JcMYB019 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592162.10.0transcription factor MYB98-like
SwissprotQ9S7L22e-99MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2C9UKE50.0A0A2C9UKE5_MANES; Uncharacterized protein
STRINGcassava4.1_023016m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-102myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]