PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G039000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 288aa    MW: 31982.6 Da    PI: 7.642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G039000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20116166255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr ++ +g+++AeIrdp   + k +r++lg+f+ta eAaka++ a+ +l+g
  Manes.14G039000.1.p 116 HYRGVRCRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDTAAFRLRG 166
                          8*****999.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-30115174No hitNo description
Gene3DG3DSA:3.30.730.101.3E-31115175IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22116176IPR016177DNA-binding domain
SMARTSM003806.7E-37116180IPR001471AP2/ERF domain
PfamPF008473.4E-13116166IPR001471AP2/ERF domain
PROSITE profilePS5103223.828116174IPR001471AP2/ERF domain
PRINTSPR003678.5E-13117128IPR001471AP2/ERF domain
PRINTSPR003678.5E-13156176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASPHQVSTL DRITHHLLTD ADCASMDNFI CSLDTFCSYT STYHSSKTET QEFDCLDLPH  60
QPHKSESKPH KSSSLSQRKP TMSQISIPPP ATVNAVPHQQ PVATENNRSD SSGGKHYRGV  120
RCRPWGKYAA EIRDPNKKGA RVWLGTFDTA IEAAKAYDTA AFRLRGSKAI LNFPLEIGNS  180
VNSQQESESE STVTDNKYDH SKNDNNNNNE KKRKIEETKA LESSNNMNNN KIIKTEKPSP  240
ETTDPLTPSS WKGFWDEEKM GIFNVPPLSP LSPHPSMGMG YSRVMVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31114179368ATERF1
3gcc_A2e-31114179368ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G039000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9146485e-91JQ914648.1 Hevea brasiliensis AP2/ERF super family protein (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593177.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2C9UIJ70.0A0A2C9UIJ7_MANES; Uncharacterized protein
STRINGcassava4.1_013214m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-48ERF family protein