PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G023500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 636aa    MW: 69470.4 Da    PI: 7.0829
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G023500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.13.2e-1102656352374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++Ll++A a+++g++  a+++L+r+s+ ++p+g++ qRl  y++ AL++r++        a +p + +e  s+e++ +++l++++sP++
  Manes.14G023500.1.p 265 KQTLLDAASAINEGKTGIASEILERVSQFSNPKGNSEQRLMEYMLMALKSRVNP-------AENPPPVAELYSKEHVLSTRLLYDISPCF 347
                          589**************************************************9.......3344444445699**************** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          k+++++aN aIlea+  +    +  H+iDfdi+qG Q+++Ll+aL++R + +p +++iT+v+++e ++ke+l+++g +L+++A ++g+++
  Manes.14G023500.1.p 348 KLGFMAANLAILEATIDQpstsRGFHVIDFDIGQGCQYMNLLHALSERLNRKPfTVKITAVADNEGEEKERLKSVGGKLSQLAGRFGLSL 437
                          **************98886655667************************888879********9999*********************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          +fnv v+ +l++l+ ++L ++p+E laVn++++lhr++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++F++r  ea+++y a
  Manes.14G023500.1.p 438 HFNV-VSCKLAELSRDSLGCDPEEPLAVNFAFNLHRMPDESVSTENPRDELLRRVKGLAPRVVTLVEQEINSNTAPFMARANEACSHYGA 526
                          ***9.7999********************************************************************************* PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveee 354
                          l++s+e+++ re+ +r+kvE+  lgr++ n vaceg++r+er+e ++kWr+r+++aGF   pls+++ +++k+ l+  +  + g++v+ee
  Manes.14G023500.1.p 527 LLESIESTVQREHPNRQKVEEG-LGRKLANSVACEGRDRVERCEVFGKWRARMGMAGFALKPLSHNVGESMKARLSSGNqvNPGFTVKEE 615
                          **********************.*************************************************99987665789******* PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g + +gW++++L+++SaWr
  Manes.14G023500.1.p 616 NGGVSFGWMGKTLTVASAWR 635
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.106238613IPR005202Transcription factor GRAS
PfamPF035141.1E-107265635IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAYGFFGGGA DFYTGIASRS IVTMNSNDLS QPSHRTQLSQ MFLDPTSQIV KHRTPTATVT  60
TQGVTGKRTL ADFQAHQQQQ QLQHPNLNPA LNGLLMRSVK PRMSLHTSSN STLSPIDFTA  120
NMSPELSSLS HRYGVPLIQE LGAQTINLAH GPTMLSMNRA SSAVSDMNTL QNQNRGEAIM  180
GGQESKKRMM NRLQELEKQL LDDNEDDEGD AVSVITNANS DWSETIQNLI TSSTPNPISP  240
SPTSSSPSCS SSSTSVTTPV HNCSKQTLLD AASAINEGKT GIASEILERV SQFSNPKGNS  300
EQRLMEYMLM ALKSRVNPAE NPPPVAELYS KEHVLSTRLL YDISPCFKLG FMAANLAILE  360
ATIDQPSTSR GFHVIDFDIG QGCQYMNLLH ALSERLNRKP FTVKITAVAD NEGEEKERLK  420
SVGGKLSQLA GRFGLSLHFN VVSCKLAELS RDSLGCDPEE PLAVNFAFNL HRMPDESVST  480
ENPRDELLRR VKGLAPRVVT LVEQEINSNT APFMARANEA CSHYGALLES IESTVQREHP  540
NRQKVEEGLG RKLANSVACE GRDRVERCEV FGKWRARMGM AGFALKPLSH NVGESMKARL  600
SSGNQVNPGF TVKEENGGVS FGWMGKTLTV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3928163520375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G023500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592369.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2C9UJ790.0A0A2C9UJ79_MANES; Uncharacterized protein
STRINGcassava4.1_003495m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-177SCARECROW-like 8