PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G021100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 459aa    MW: 50036.4 Da    PI: 5.8888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G021100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30252310259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D + WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++d++++++tY+g+H+h+
  Manes.14G021100.1.p 252 NDAWGWRKYGQKPIKGSPYPRNYYRCSSSkGCAARKQVERSNTDQNMFIVTYSGDHTHP 310
                          8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-30242311IPR003657WRKY domain
PROSITE profilePS5081131.617246312IPR003657WRKY domain
SuperFamilySSF1182903.79E-26247311IPR003657WRKY domain
SMARTSM007741.7E-35251311IPR003657WRKY domain
PfamPF031063.8E-26252310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAEWDPHAVI RSLTSHSPAT NTAAYPPSQS ANYLDCLASL IFDDKDTSFS FPNTEQPVCN  60
GWQGLPDSYN PFLHTTGVHG NLPNSSISYF GEFSGQNQLQ LYHHQPPSPQ PLLPEPLALP  120
PPPLPPPPLI PALAPPALSQ PLLPPPTLLP APEPAPALSS PSPPPPLLPP PPYLSPTPPF  180
PNLQFSFPFN PGQQQFQHAR YQQQLLHQRR HPRPATSVPV PPSRTTQSSA STSRKKKSYL  240
KREVITAENI CNDAWGWRKY GQKPIKGSPY PRNYYRCSSS KGCAARKQVE RSNTDQNMFI  300
VTYSGDHTHP RSSQRGSLIR NKFLAKQNPA NEGSKESSTT PSATSLSPTT PPPAAMEQEN  360
TNENIDATQA ANMNGADLEG NGIESEGQGD GDGDGRGHYY EDEYDALVPS MTKNEDIFKD  420
LQDLRTVEES VFDFGSSDYG GLGHNPDIFS FCSGGSDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-182533131880Disease resistance protein RRS1
5w3x_D9e-182533131880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G021100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276280.0KT827628.1 Manihot esculenta WRKY transcription factor 53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633970.10.0probable WRKY transcription factor 27
TrEMBLA0A140H8Q70.0A0A140H8Q7_MANES; WRKY transcription factor 53
STRINGcassava4.1_033531m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-36WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]