PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G002400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 331aa    MW: 36042.4 Da    PI: 5.1897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G002400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Manes.14G002400.1.p 16 KGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 63
                         678*******************************************97 PP
2Myb_DNA-binding50.45.1e-1669112146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+el+++++ +lG++ W+ Ia+ ++ gRt++++k++w++
  Manes.14G002400.1.p  69 RGAFSPQEEELIIHLHSLLGNR-WSQIAAGLP-GRTDNEIKNFWNS 112
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-231066IPR009057Homeodomain-like
PROSITE profilePS5129416.2941163IPR017930Myb domain
SuperFamilySSF466892.23E-2714110IPR009057Homeodomain-like
SMARTSM007171.3E-91565IPR001005SANT/Myb domain
PfamPF002493.1E-131663IPR001005SANT/Myb domain
CDDcd001672.16E-81963No hitNo description
PROSITE profilePS5129425.21964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2567119IPR009057Homeodomain-like
SMARTSM007172.2E-1568116IPR001005SANT/Myb domain
PfamPF002498.6E-1569112IPR001005SANT/Myb domain
CDDcd001673.35E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRKPEVCGKN NNKLRKGLWS PEEDDKLMNY MLNNGQGCWS DVARNAGLQR CGKSCRLRWI  60
NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAAGLPG RTDNEIKNFW NSTIKKRLKN  120
LTSSAASPNT SDSYSEPSKE VAAAAAAAIV GGGFISMQEQ AMMNPMCTDP SLSSASSSNT  180
SMQAMFLNQM DSSPTLDHGL SMYGANAYFN NNAPPCMTPI GITSGDDLHG NQGILGGVNI  240
GIGGELHIPP LESIIIEENA RTEDIATHGN TTNNYPFSNV NKMNSNCNKA ENMAAGIGNL  300
WQGEDLKVGD WDLEELMKDV SSFPFLDFSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-271111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G002400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1486771e-110KF148677.1 Populus trichocarpa MYB transcription factor (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593036.10.0transcription factor MYB46-like
TrEMBLA0A2C9UII30.0A0A2C9UII3_MANES; Uncharacterized protein
STRINGcassava4.1_021058m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-64myb domain protein 46