PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ZF-HD

Protein Properties

Length: 279aa MW: 30805.6 Da PI: 8.9484

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G154100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98	7.3e-31	62	118	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrYkeClkN Aa++Gg+a+DGCgEfmps ge+gt +alkC+AC CHRnFHR+e + Manes.13G154100.1.p 62 KVVRYKECLKNYAAAIGGNATDGCGEFMPS-GEQGTLEALKCSACSCHRNFHRKEIDG 118 679************************9.999******************9876 PP
2	Homeobox	14.2	7.6e-05	204	259	1	52
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq + + ++ e k +++ +++ ++ + +g++ r+ kvW +N + Manes.13G154100.1.p 204 KRFRTKFTEEQKQKMLSFAEkagwKMQKLEESAVQRFCQDIGIKRRVLKVWMHNNK 259 789*********987655777789**************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.5E-29	64	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-23	64	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-29	65	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.1	66	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.0E-19	197	264	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-30	198	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-27	203	259	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEGQKERNNS SPPKEDMSIT RNGGCTAENG RIITSAASRL PFNGPTGAPS SLHLEDQRPC 60 KKVVRYKECL KNYAAAIGGN ATDGCGEFMP SGEQGTLEAL KCSACSCHRN FHRKEIDGEC 120 VYDFYHSSIV GNSGSRIILG HHNGVNGSPQ VHHINPLLSS KAPPPHQVIV SYRSGSVPSE 180 SDEKDDDDDG HGVVAIRSVG KPRKRFRTKF TEEQKQKMLS FAEKAGWKMQ KLEESAVQRF 240 CQDIGIKRRV LKVWMHNNKH NFAKKNPSTS YLEAEQSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-21	204	261	18	75	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G154100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633473.1	0.0	uncharacterized protein LOC110630336
Swissprot	Q9M9S0	2e-64	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A2C9US69	0.0	A0A2C9US69_MANES; Uncharacterized protein
STRING	cassava4.1_023329m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	8e-63	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Manes.13G154100.1.p