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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G148300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 475aa MW: 52704.5 Da PI: 6.7202 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 227 | 277 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Manes.13G148300.1.p 227 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 277 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.32E-34 | 226 | 286 | No hit | No description |
SMART | SM00380 | 1.5E-40 | 227 | 290 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 227 | 284 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 227 | 285 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 227 | 285 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 228 | 277 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-11 | 228 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-11 | 250 | 266 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MAATKNNAGK SRKGADEKQR LTRQDWELDR CKEETNLSFH ERQQRKPVFG EASAAERPLK 60 KIRSPERQEP IQFSAFSTHQ SVASFSISPS SSFSSHPPTS SSSSSSALPS GSSIQFPFSF 120 EGCNQPMQFP HQLMTNPSLP YLLSLTQVAQ NQQQIISYAQ NQQQGIACPQ LFAGESALAH 180 KQQQQQLFQY WSDTLNLSPR GMMMNRLGPD GRPLFRPPVQ PINTTKLYRG VRQRHWGKWV 240 AEIRLPRNRT RLWLGTFDTA EDAAMAYDRE AFKLRGENAR LNFPELFLNK DKAITTAPTS 300 TVSSPPTPNQ SSSPKQTKQI LDLRASSMEN MPPPPPVPPP SQPSQGDNPD NDSGMCSSGA 360 TVSDEVQAVA EGCSGGEDIS VSQELVWGDM AESWFNAIPS GWEPGSPIWD DFDTTNNLLM 420 QTHLPFGNPN QQQFNDSSEL QRQQHNMSLA SSSSSASSFS SSIPMKPFFW KDQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-21 | 226 | 284 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G148300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631591.1 | 0.0 | ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | A0A2C9UTC4 | 0.0 | A0A2C9UTC4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006833m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 8e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G148300.1.p |