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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G141800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | HB-other | ||||||||
Protein Properties | Length: 1777aa MW: 199763 Da PI: 5.0635 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.7e-18 | 31 | 87 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++qle+Le+ ++ + yps++ r+eL+++lgL++rq ++WF+ rR k++k Manes.13G141800.1.p 31 KSKRKMKTASQLEILERTYAVETYPSESLRAELSAQLGLSDRQLQMWFCHRRLKDRK 87 679****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-17 | 16 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.52E-15 | 25 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-15 | 30 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.34E-13 | 31 | 87 | No hit | No description |
Pfam | PF00046 | 5.7E-16 | 31 | 87 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 17.171 | 564 | 623 | IPR018501 | DDT domain |
SMART | SM00571 | 1.1E-23 | 564 | 623 | IPR018501 | DDT domain |
Pfam | PF02791 | 4.5E-18 | 565 | 620 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.1E-15 | 746 | 813 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.3E-7 | 963 | 1000 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 7.1E-13 | 1140 | 1212 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1777 aa Download sequence Send to blast |
MDGNGSAAAG DGGSGGSVEG EKKKPPEGEV KSKRKMKTAS QLEILERTYA VETYPSESLR 60 AELSAQLGLS DRQLQMWFCH RRLKDRKAPS VKRQNKDSPA PSATPAGEEM GPVTEVGNEL 120 VSVSASGSSP FGHGMDPRRL VARTPGVAVP RIGADMSAMK RYYEPQQSIT ELRAIAFVEA 180 QLGEPLREDG PILGMEFDPL PPDAFGAPLA SAGQQKQPGR PFEATVYERP DLKPVKGATR 240 PVHEYQFLPQ QPTVRGEAYE RVAPSYQYGS PLDGHNSKTA ASSTVRPFVH ANEQVPSSYG 300 FPSQLPSLNL MPQEGRQNHL LPSATAEYDN MLRKTSLTNI GVDSQFGALP ITALDNPFVP 360 SDRRVTHDED ILRIERKRKS EEARIAREVE AHEKRIRKEL EKQDLLRRKR EEQIRKEMER 420 HDRERRKEEE RILREKQREE ERYQREQRRE LERRERFLQK ESIRAEKMRQ KEELRREKEA 480 ARQKAATERA IARRIAKESM ELIEDERLEL MELAASTKGL PSILSLSFET LQNLDSFRDK 540 LVRFPPKSVL LKRPFAVQPW SDSEENVGNL LMVWRFLITF ADVLGIWPFT LDEFVQAFHD 600 YDPRLLGEIH FALLRTIIKD IEDVARTPAT GLGANQNSAA NPGGGHPQIV EGAYAWGFDI 660 RIWQRHLSPL TWPEILRQFA LSAGFGPQLK KRNVEQAYIR DDNEGNDGED VITNLRNGAA 720 VENAVAIMQE RGFSNHRRSR HCLTPGTVKF AAFHVLSLEG SKGLTILEVA EKIQRSGLRD 780 LTTSKTPEAS IAAALSRDSK LFERTAPSTY CVRPAYRKDP VDAEAILSAA RERIRIFKSG 840 FVDGEDADEA ERDEDSESDV ADDPEVDDFG TDLNPKKEDH NSPEANKFNA KTQFENGKEG 900 SDVMRTPKVG LQNLGEGFSS MHSKGTHEAK NVGSSIDQSG DFLGVPTNTE QEDADIDESN 960 LGEPWVQGLM EGEYSDLSVE ERLNALVSLI GVAIEGNSIR LVLEERLEAA NALKKQMWAE 1020 AQLDKRRMKE EYVTRMHYPS FTGNKVETNL TTSTAEVRQS PLVTVDMPMN ASAQQEQSDD 1080 PQNDMTYPNN MPSEGNMHMQ DLSAGPDNLA YQQPGLAADK SRSQLKSFIG HKAEEMYVYR 1140 SLPLGQDRRR NRYWQFVASA SCNDPGCGRI FVELHDGRWR LIDTEQALDS LFASLDVRGV 1200 RESYLHMMLQ KIEMPFKEAV RRNMQCAGIE RQSGESVKAE AVEVVTGLEC STGIDSPNST 1260 ICVVDSDMSE STSFSIELGR NETERNNALR RYQDFGKWIW KECFNSSTLC AMKHGKKRCR 1320 QLLAVCDYCH DIYLSEDDCC PSCNNTYQHS GSDFNFSKHS TREEKLKIGL DYNFNGSSSP 1380 LRIRLLKLQL ALIEVSLTPE ALQPFWTNGY RKSWGTKLQS SSSAEDLLEV LTLLEGSIKR 1440 DYLSSSFETT SELLGSDNPS GLAANDYYGM EKVTVLPWLP RTTAAAALRI MEFDSSISYT 1500 LHQKVESQKD RGNGDFIKLP SKFAIAKNTQ DNEAAETPPH QAGLLQEESW VDIAGLGRGR 1560 GIRGRGRGRT RGGRSQRKVT GSRSESSKRR MSTNNDRLGQ VLSWKTQSRG RRGRKRGRRS 1620 IRSRQKQVKR PVEPQIPKET IYEKTPRRLE RDDWNGDEAR FQLQNAENLS SSSEKSEYDD 1680 DNGQATGDEY DDLAVDDYGG GFNGKSNELL EGSDYNIDVN EDDDDEEDEL DEDEDEQGDM 1740 EVEGYINGDS DEDEMREQNG DPDEEGIGST SSDFSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1610 | 1618 | RRGRKRGRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G141800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632678.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2C9URI8 | 0.0 | A0A2C9URI8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033420m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G141800.1.p |