PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G141600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 296aa MW: 33162.3 Da PI: 9.5717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G141600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.7	1.6e-34	61	201	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+Ptd+el+ e+L+ kv+++ ++++ i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Manes.13G141600.1.p 61 LPAGVKFDPTDQELL-EHLEGKVKSDArklhplIDEFIPtIEGEnGICYTHPQKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtda 148 799**********.99**9996665443332333665557******.555666688**************744446 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Manes.13G141600.1.p 149 eggETRWHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 201 555778********.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-39	54	220	IPR003441	NAC domain
PROSITE profile	PS51005	34.162	61	220	IPR003441	NAC domain
Pfam	PF02365	5.9E-16	62	201	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MTWCNDSNDV QTIERSSPAP SNSTTVNLSQ THKHSLLKSC PSCGHQIKCQ DQARIHDLPG 60 LPAGVKFDPT DQELLEHLEG KVKSDARKLH PLIDEFIPTI EGENGICYTH PQKLPGVSKD 120 GLVRHFFHRP SKAYTTGTRK RRKVHTDAEG GETRWHKTGK TRPVFVGGKV KGYKKILVLY 180 TNYGKQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCGSSM KDSPPSSKLK 240 GQSGHEVANS LKNSTLVHEY YNPSFISFDQ SSQTRVNPPQ LLPHFAAHDG SSFIP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G141600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605229	0.0	KR605229.1 Manihot esculenta NAC transcription factors 91 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632252.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-132	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0M4FSJ0	0.0	A0A0M4FSJ0_MANES; NAC transcription factors 91
STRING	cassava4.1_032739m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-126	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Manes.13G141600.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508] Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]