PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G124500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 290aa    MW: 31665.1 Da    PI: 6.16
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G124500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.73.3e-37101012102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++++isw+e+g++fvv+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+k
  Manes.13G124500.1.p  10 FLTKTYQLVDDPSTDDVISWNETGTTFVVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFRRGHK 90 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell++i+r+k+
  Manes.13G124500.1.p  91 ELLSEIRRRKT 101
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-35799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PSTDDVISWN ETGTTFVVWK TADFARDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFRRGHK ELLSEIRRRK TVNPTATQTP VACKSGAGGG  120
LTTSLSNSGE DLGSTSTSSQ DSKNPGSVET AATMTTQFAD LSGENKKLKK DNEMLSSELA  180
QAKKQCDELI AFLTEYVKVG PDQINRIMRQ GSCCGSTLDG LVSGITAGTD DHNDDDDDDK  240
NGRNDDGEDA GGSGESFKLF GVLVKGNTKK RGRAENLGFS RPHAKEIKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26510125131Heat shock factor protein 1
5d5v_B2e-26510125131Heat shock factor protein 1
5d5v_D2e-26510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G124500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633190.10.0heat shock factor protein HSF24-like
SwissprotP223351e-114HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2C9USL00.0A0A2C9USL0_MANES; Uncharacterized protein
STRINGcassava4.1_013174m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-82heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]