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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G120400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21567.7 Da PI: 9.0535 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 24 | 73 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Manes.13G120400.1.p 24 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 73 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-30 | 23 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.70E-26 | 24 | 82 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-21 | 24 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.155 | 24 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-11 | 24 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-37 | 24 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MENGVEKAMA TRKRGDGTVD GDRQYKGIRM RKWGKWVAEI REPNKRSRIW LGSYSTPVAA 60 ARAYDTAVFY LRGPSARLNF PEFLAGESIG GVCGDMSAAS IRKKATEVGA RVDALETALS 120 HHHHHHHHHH HHHHHHDHHR SSSSSSNSTN NNSSSNNKSV IDSSEFKSFF ERVDLNKVPE 180 AEDSDVEWER N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-14 | 23 | 81 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-14 | 25 | 81 | 6 | 63 | ATERF1 |
3gcc_A | 1e-14 | 25 | 81 | 6 | 63 | ATERF1 |
5wx9_A | 4e-14 | 24 | 89 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G120400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632719.1 | 1e-140 | ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q9FH94 | 4e-60 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A2C9UR29 | 1e-138 | A0A2C9UR29_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016924m | 1e-139 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-56 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G120400.1.p |
Publications ? help Back to Top | |||
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