PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G120400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 192aa    MW: 21567.7 Da    PI: 9.0535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G120400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-172473255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Manes.13G120400.1.p 24 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 73
                         69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-302382IPR001471AP2/ERF domain
CDDcd000189.70E-262482No hitNo description
SuperFamilySSF541719.15E-212481IPR016177DNA-binding domain
PROSITE profilePS5103222.1552481IPR001471AP2/ERF domain
PfamPF008478.2E-112473IPR001471AP2/ERF domain
SMARTSM003806.0E-372487IPR001471AP2/ERF domain
PRINTSPR003673.9E-112536IPR001471AP2/ERF domain
PRINTSPR003673.9E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MENGVEKAMA TRKRGDGTVD GDRQYKGIRM RKWGKWVAEI REPNKRSRIW LGSYSTPVAA  60
ARAYDTAVFY LRGPSARLNF PEFLAGESIG GVCGDMSAAS IRKKATEVGA RVDALETALS  120
HHHHHHHHHH HHHHHHDHHR SSSSSSNSTN NNSSSNNKSV IDSSEFKSFF ERVDLNKVPE  180
AEDSDVEWER N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-142381160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-142581663ATERF1
3gcc_A1e-142581663ATERF1
5wx9_A4e-1424891481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G120400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632719.11e-140ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9FH944e-60ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2C9UR291e-138A0A2C9UR29_MANES; Uncharacterized protein
STRINGcassava4.1_016924m1e-139(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-56DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]