PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G119700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 345aa    MW: 37465.3 Da    PI: 10.0367
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G119700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.5e-32273330359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Manes.13G119700.1.p 273 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLIVTYEGEHNHT 330
                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.1E-17222269IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-33259330IPR003657WRKY domain
PROSITE profilePS5081130.986266332IPR003657WRKY domain
SuperFamilySSF1182903.79E-27268330IPR003657WRKY domain
SMARTSM007741.4E-38271331IPR003657WRKY domain
PfamPF031061.9E-27273329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVELMMTYR NDGFAAKMEE NAVQEAASGL ESVNKLIRLL SHQNQENIQS SSSSPSSRSS  60
MDIEMDCKAV ADVAVSKFKK VISLLGRTRT GHARFRRAPV ATPFSNAQIS QENQVPASKI  120
YYATPIQQIP PPPPPPPSVP NHFHDYSSMT VMSKNNGVTN DRKESSTTIN FSYSSAGNSF  180
MSSLTGDTID SKQPSSSSAF QITNLSQVSS AGKPPLSSSS LKRKCSSENL GSGKCSGGSS  240
GRCHCSKKSR KLRLKRVVRV PAISLKMADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV  300
RGCPARKHVE RALDDPSMLI VTYEGEHNHT LSIAETSNLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21259331273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G119700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276510.0KT827651.1 Manihot esculenta WRKY transcription factor 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631990.10.0probable WRKY transcription factor 15 isoform X1
SwissprotQ9STX04e-92WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A140H8T00.0A0A140H8T0_MANES; WRKY transcription factor 76
STRINGcassava4.1_011056m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-65WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]