PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G107400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 268aa    MW: 29999 Da    PI: 8.3279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G107400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.7e-19122176256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Manes.13G107400.1.p 122 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 176
                          788899***********************************************98 PP
2HD-ZIP_I/II125.42.5e-40122211191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +
  Manes.13G107400.1.p 122 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-A 210
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Manes.13G107400.1.p 211 L 211
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-18118179IPR009057Homeodomain-like
PROSITE profilePS5007117.459118178IPR001356Homeobox domain
SMARTSM003897.3E-16120182IPR001356Homeobox domain
PfamPF000463.7E-16122176IPR001356Homeobox domain
CDDcd000866.35E-17122179No hitNo description
Gene3DG3DSA:1.10.10.609.6E-18122176IPR009057Homeodomain-like
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PfamPF021835.0E-10178212IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.6E-25178221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGCLDDGCNT GLVLGLGFSA STAMEKPENS NNQKHKMMNK LCFEPSLSLG LSGEIYNHHD  60
VSKGREESVG VDLFRHASPL SAVSSFSSGR VKRERDLSSE EIEAERVSSR VSDEDEDAIN  120
TRKKLRLTKE QSALLEESFK QHSTLNPKQK QALARQLNLR PRQVEVWFQN RRARTKLKQT  180
EVDCEFLKKC CETLTDENRR LQKELQELKA LKLAQPFYMQ LPAATLTMCP SCERIGGVAD  240
GSSKNNPFSM APKPHFYNPF TNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126TRKKLRL
2170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G107400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631568.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-103HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2C9UQH40.0A0A2C9UQH4_MANES; Uncharacterized protein
STRINGcassava4.1_013986m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-93HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]