PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 268aa MW: 29999 Da PI: 8.3279

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G107400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.7e-19	122	176	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Manes.13G107400.1.p 122 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 176 788899***********************************************98 PP
2	HD-ZIP_I/II	125.4	2.5e-40	122	211	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ + Manes.13G107400.1.p 122 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-A 210 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Manes.13G107400.1.p 211 L 211 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-18	118	179	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	118	178	IPR001356	Homeobox domain
SMART	SM00389	7.3E-16	120	182	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	122	176	IPR001356	Homeobox domain
CDD	cd00086	6.35E-17	122	179	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-18	122	176	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	153	176	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.0E-10	178	212	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.6E-25	178	221	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGCLDDGCNT GLVLGLGFSA STAMEKPENS NNQKHKMMNK LCFEPSLSLG LSGEIYNHHD 60 VSKGREESVG VDLFRHASPL SAVSSFSSGR VKRERDLSSE EIEAERVSSR VSDEDEDAIN 120 TRKKLRLTKE QSALLEESFK QHSTLNPKQK QALARQLNLR PRQVEVWFQN RRARTKLKQT 180 EVDCEFLKKC CETLTDENRR LQKELQELKA LKLAQPFYMQ LPAATLTMCP SCERIGGVAD 240 GSSKNNPFSM APKPHFYNPF TNPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	126	TRKKLRL
2	170	178	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G107400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631568.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-103	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2C9UQH4	0.0	A0A2C9UQH4_MANES; Uncharacterized protein
STRING	cassava4.1_013986m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-93	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Manes.13G107400.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]