PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G105700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 375aa    MW: 41618.8 Da    PI: 6.867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G105700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-11198244455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++++k+Lq
  Manes.13G105700.1.p 198 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKHVKQLQ 244
                          5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9198244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-16198256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-11199248No hitNo description
SuperFamilySSF474593.79E-16199259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDIAPARWFT EQDLEDYNLI HEYHMNYLDE LTNQNMAAAL GENLRQSFSS ESYSSYPPFK  60
AKDTATATAN TTTLSSSSIE NSQTSSERPS KLHETNSWNS SMITTDHQSP RPSTTPQILS  120
FESSSVSAPA NSQQFFMTLD STTVKPKDEA ASPRNMHFQP LISKVAPFGN QNHEIKTRQG  180
TTNKRPYSMT RTPAHAQDHI LAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKHV  240
KQLQERVKVL EEQTKKRTVE SVVLVKKSQV SADDDSSSCD ENSDGGSDSA LPEIEARVSD  300
KDVLIRIHCG KQQGVVPKIL NEVENLNLSI INSSILPFGN STLDITIIAQ MEAETSMAVK  360
DLVKNLRVAF LKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13198247857Transcription factor MYC2
5gnj_B2e-13198247857Transcription factor MYC2
5gnj_E2e-13198247857Transcription factor MYC2
5gnj_F2e-13198247857Transcription factor MYC2
5gnj_G2e-13198247857Transcription factor MYC2
5gnj_I2e-13198247857Transcription factor MYC2
5gnj_M2e-13198247857Transcription factor MYC2
5gnj_N2e-13198247857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRE
2203208RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G105700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633597.10.0transcription factor bHLH18-like
TrEMBLA0A2C9URS60.0A0A2C9URS6_MANES; Uncharacterized protein
STRINGcassava4.1_033627m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-57bHLH family protein