PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G074700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 443aa    MW: 49377.3 Da    PI: 4.711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G074700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2852.2e-87454382373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                          ++lLl+cA a++++d +laq++++ l++ as  gdp+qRl++ f++AL +r ++ ++   +   +s+     + +++++++l  ++++ P
  Manes.13G074700.1.p  45 EKLLLHCASALENNDVTLAQQVMWVLNNVASLVGDPNQRLTSWFLRALISRSSKVCPAATNFDGSSTI----QRRQMSVTELagYVDLIP 130
                          689************************************************99955555544333333....444445555556****** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                          +++f++ + N+aIl+a+eg+ +vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ +   ++    + ++ee+g rL +fA+  +vpf
  Manes.13G074700.1.p 131 WHRFGFCASNSAILKAIEGCPKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSCRPPVpplLNVSTEEVGLRLGNFAKFRDVPF 220
                          ********************************************************97776566779999******************** PP

                 GRAS 177 efnvl............vakrledleleeL........rvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvve 243
                          efnv+            ++++ + + +e+L        +++ +Eal++n++  l +l d++    +    rd++L l+ksl+P ++ vv+
  Manes.13G074700.1.p 221 EFNVIddpcsssisteiMSEESSGFYFESLlnhltpllDLRDDEALVINCQNWLRYLSDDQNGRVQdssLRDDFLCLIKSLNPCIILVVD 310
                          ****99998888777763444444555555554454458888***************9987554433559******************** PP

                 GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                          +++d++++s+  r++ +++y +  +d+le+ lp++s++ri +E   +g +i+n+++  g++r+er e+  k ++r+++aGF +v++ e++
  Manes.13G074700.1.p 311 EDCDLSAPSLTSRITTCFNYLWIPLDALETFLPKDSSQRIEYESD-IGHKIENIISFDGFQRIERLESGIKLSQRMKNAGFFSVQFCEET 399
                          *********************************************.******************************************** PP

                 GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          + ++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW
  Manes.13G074700.1.p 400 VREVKSLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAW 438
                          ************.889999999****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576135No hitNo description
PROSITE profilePS5098541.48918420IPR005202Transcription factor GRAS
PfamPF035147.5E-8545438IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MKTELRANTT TSIPLQNSSL FTNPQSSLSG ALQGCLGSLD GACIEKLLLH CASALENNDV  60
TLAQQVMWVL NNVASLVGDP NQRLTSWFLR ALISRSSKVC PAATNFDGSS TIQRRQMSVT  120
ELAGYVDLIP WHRFGFCASN SAILKAIEGC PKVHILDFSI THCMQWPTLI DALAKRPEGP  180
PSLRITVPSC RPPVPPLLNV STEEVGLRLG NFAKFRDVPF EFNVIDDPCS SSISTEIMSE  240
ESSGFYFESL LNHLTPLLDL RDDEALVINC QNWLRYLSDD QNGRVQDSSL RDDFLCLIKS  300
LNPCIILVVD EDCDLSAPSL TSRITTCFNY LWIPLDALET FLPKDSSQRI EYESDIGHKI  360
ENIISFDGFQ RIERLESGIK LSQRMKNAGF FSVQFCEETV REVKSLLDEH ASGWGMKREE  420
DMLVLTWKGH NSVFATAWVP DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-531744065474Protein SHORT-ROOT
5b3h_B3e-533844027420Protein SHORT-ROOT
5b3h_E3e-533844027420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G074700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632514.10.0scarecrow-like protein 32
TrEMBLA0A2C9UPS00.0A0A2C9UPS0_MANES; Uncharacterized protein
STRINGcassava4.1_029854m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-118GRAS family protein