PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G071000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 762aa    MW: 83339.4 Da    PI: 5.8142
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G071000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1989144156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  q+k+WFqN+R+++k
  Manes.13G071000.1.p  89 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQIKFWFQNKRTQMK 144
                          688999***********************************************999 PP
2START214.34.4e-672784981206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+++a+ ++p+W++s     + +n+de++++f+++ +     ++ ea+r++++v m+  +lve l+d++ qW++ +     
  Manes.13G071000.1.p 278 ELAVAAMEELFRMAQMGDPLWMSSLdgtdDVLNEDEYIRIFPRGIGprpigFKCEASRETAIVMMDYRNLVECLMDVN-QWSTVFSgivs 366
                          57899***********************99*************999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+t+ev+s+g      galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdv++d+    p +s +vR++++pSg+li+++s g
  Manes.13G071000.1.p 367 RAMTVEVLSTGvagncnGALQVMTAEFQLPTPLVPtRESYFVRYCKQHAEGTWAVVDVALDHI---P-TSAGVRCRRRPSGCLIQEMSSG 452
                          *********************************************************999985...4.5679****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwvehv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Manes.13G071000.1.p 453 YSKVTWVEHVEVDDRDVHSLYKQLVSSGHAFGAKRWVATLNRQCER 498
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.97E-1971146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-2274140IPR009057Homeodomain-like
PROSITE profilePS5007116.74686146IPR001356Homeobox domain
SMARTSM003896.1E-1987150IPR001356Homeobox domain
PfamPF000462.9E-1789144IPR001356Homeobox domain
CDDcd000861.77E-1889147No hitNo description
PROSITE profilePS5084844.157269501IPR002913START domain
SuperFamilySSF559616.53E-37270500No hitNo description
CDDcd088751.10E-125273497No hitNo description
SMARTSM002341.6E-60278498IPR002913START domain
PfamPF018521.7E-56279498IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-5334467IPR023393START-like domain
SuperFamilySSF559618.24E-24518753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MLAGVMIPAR NMPSMIETHG NISGFGSSSG ITLGQPNMME GQLHHLDMTQ NTSESDFARI  60
RDDELDSINT TSENHDGGSG DDQGPRSKKK RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE  120
LGRELGLEPL QIKFWFQNKR TQMKTQHERQ ENNRLRSENE KFKADNMRYR EALANASCPT  180
CGGPTAIGEM SFDEHHLRLE NARLREEIDR ISAIAAKYVG KPAVNYPLLS SPLPPRSLEL  240
GVGNFGALTE IGGEMYGVGD LLRSIGAHSD IDKPMIVELA VAAMEELFRM AQMGDPLWMS  300
SLDGTDDVLN EDEYIRIFPR GIGPRPIGFK CEASRETAIV MMDYRNLVEC LMDVNQWSTV  360
FSGIVSRAMT VEVLSTGVAG NCNGALQVMT AEFQLPTPLV PTRESYFVRY CKQHAEGTWA  420
VVDVALDHIP TSAGVRCRRR PSGCLIQEMS SGYSKVTWVE HVEVDDRDVH SLYKQLVSSG  480
HAFGAKRWVA TLNRQCERLA SSMATNIPTG DIGVITSEEG RKSMLKLAER MAKSFCSGVS  540
ASTAHTWTTL SGTGADDVRV MTRKSIDDLG RPPGIVLSAA TSFWLPIPPK RVFDFLRDEN  600
SRSQWDILSN GGVVQEMAHI ANGRDTGNCV SLLRVNSANS SQSNMLILQE SCTDPTASFV  660
IYAPVDVVSM NVVLNGGDPD YVALLPSGFA ILPDGTTTNT VHGGGIGEFN CASGSLLTVA  720
FQILVDSVPT AKLSLGSIAT VNNLIACSVE RIKAALSGES V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G071000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633498.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_021633499.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A251JGV50.0A0A251JGV5_MANES; Uncharacterized protein
STRINGcassava4.1_002453m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2