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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G059800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | CO-like | ||||||||
Protein Properties | Length: 416aa MW: 44899.1 Da PI: 4.8962 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.3 | 4.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Manes.13G059800.1.p 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 18.8 | 3.3e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++ +++ + C + + lC++C H + H++++ Manes.13G059800.1.p 46 LLCERCNAQPALIRCAEEKISLCQNCDWMVHGSsssstnHKRQT 89 57************************999994478888888766 PP | |||||||
3 | CCT | 62.3 | 1.5e-21 | 358 | 401 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ Manes.13G059800.1.p 358 RCNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 401 6789*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.542 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.94E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.172 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00837 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.7 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.2 | 358 | 400 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.0E-16 | 358 | 400 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNAQPALIRC 60 AEEKISLCQN CDWMVHGSSS SSTNHKRQTI NCYSGCPSAS ELASLWSFVL DLTSAGESTC 120 ERELGLMSII ENSCSREWGP PENTVNQNVS GTVAVDEADV AKSSVYGGTS SMPEFISGPN 180 NPEQPVGSAN APLPKFCCPG TKGPALCEDD DLYEDFNMDE MDLNLENYEE LFGVTLSHSE 240 ELLENGGINS LFGTKDISAA DSNCQGAVAA EGSSVGLVNA MQPACSNAAS ADSMLSAKTE 300 PILCFTTRQG HSSLSFSGLT GESSAGDYQD CGASSMLLMG EPPWCPPCPE SSCPSSNRCN 360 AVMRYKEKKK TRKFEKKVRY ASRKARADVR RRVKGRFVKA GDAYDYDPLS QTRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G059800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633078.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_021633079.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-151 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A2C9UP14 | 0.0 | A0A2C9UP14_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008554m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-124 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G059800.1.p |