PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G055700.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 159aa MW: 18022.6 Da PI: 10.0198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G055700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.7	1.3e-30	51	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+ Manes.13G055700.3.p 51 FYDAYATRLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 138 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-29	51	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDEQPSMSED GDVNHIVESS SGKEVTTSEG SSDIEPYVGM EFESEEAAKV FYDAYATRLG 60 FIMRVDAFRR SMRDGKVVWR RLVCNKEGFR KLRPRRSENR KPRAITREGC KAMIVVKKEK 120 TGKWVVTRFV KEHNHPLVAI PSNGRRSVLL SQTPVICS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G055700.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631537.1	1e-111	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q9SZL8	6e-32	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A251JGA9	1e-113	A0A251JGA9_MANES; Uncharacterized protein
STRING	cassava4.1_023042m	1e-105	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-64	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.13G055700.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]