PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G055500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 30044.9 Da PI: 7.237 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.1 | 7.9e-25 | 76 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++++++ kw+vtk+ +eHnH+ Manes.13G055500.1.p 76 EFYIAYGRHTGFTVRIHHNRRSRVNNMVIGQDFVCSKEGFREKKYIYRKDR-VlpPPPATREGCPAMLRLTLRDGVKWVVTKFIKEHNHT 164 6******************************************99883333.234889******************************** PP FAR1 89 la 90 l+ Manes.13G055500.1.p 165 LM 166 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-22 | 76 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MIESSSNKVF GSDDSERSFR DYDGHEFTED ELSKNIDLCL GEVDKITWQS NEPPSSSDIV 60 EPCIGMEFNS RDHAREFYIA YGRHTGFTVR IHHNRRSRVN NMVIGQDFVC SKEGFREKKY 120 IYRKDRVLPP PPATREGCPA MLRLTLRDGV KWVVTKFIKE HNHTLMSPSR VPWRGSAKNF 180 ISEDEKDRRI RELTIELNNE KQRCKRQCAA YQEQLRMVLA YIEEHTNHLS TKVQDIVNNV 240 KKLENELQED LDCKYV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G055500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632224.1 | 0.0 | uncharacterized protein LOC110629521 isoform X1 | ||||
Refseq | XP_021632225.1 | 0.0 | uncharacterized protein LOC110629521 isoform X1 | ||||
Refseq | XP_021632226.1 | 0.0 | uncharacterized protein LOC110629521 isoform X1 | ||||
Refseq | XP_021632227.1 | 0.0 | uncharacterized protein LOC110629521 isoform X1 | ||||
Refseq | XP_021632228.1 | 0.0 | uncharacterized protein LOC110629521 isoform X1 | ||||
TrEMBL | A0A251JGB4 | 0.0 | A0A251JGB4_MANES; Uncharacterized protein | ||||
STRING | XP_002527269.1 | 1e-155 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-42 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G055500.1.p |