PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G052300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 569aa    MW: 62020.1 Da    PI: 6.3586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G052300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09373420455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Manes.13G052300.1.p 373 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 420
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-10367424No hitNo description
SuperFamilySSF474591.83E-16367434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16369434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6373420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MESEFFLNAG IPPPPLHFEP NFTSALPTWH SLSSAMEMQG NELYCSTEQS PDCFSAPNWE  60
KSTDQCLNFD SALSSMVSSP AASNSNLSSD GIMIRELIGK LGNINPGEIS PHSQPMLAAS  120
YITPGNNSTN NSCYSTPLNS PPKLNLPPLD KFSKENLNFP SLGKPMALNS SVAEFTADPG  180
FAERAARFSC FGSRSFNGRS SQFGLNNAEL AYKSNQLMGN GKLPRVSSTP SLMVIGSQKG  240
NNSSLQDRSE LANSSQSSLS EQNPTGESAM KVSCELNSKK RKSVSRGKAK ESQPNSTPPA  300
NSAKDAEIEN NSNSKRSKPN EGKGNEKTAV KAEEDQKGSD GDEKQTKNNN SKPPEPPKDY  360
IHVRARRGQA TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ  420
RQVEFLSMKL ASVNTTRLDF NMDTLNSKDI FQSTNQLQNP IFPIDSSATA IFGHQLQQNP  480
ALHSNIANGT VTQCSVVPLD TGLCQTLNMQ LPPLEGFNHN DPQYPTFCED DLQTIVQMGF  540
GQNLNQETTL QAHNFTGPNQ VSHMKTEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G052300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632246.10.0transcription factor bHLH62-like
TrEMBLA0A2C9UR020.0A0A2C9UR02_MANES; Uncharacterized protein
STRINGcassava4.1_004576m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-110bHLH family protein