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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G048400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 30997.1 Da PI: 5.0316 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 69 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Manes.13G048400.2.p 69 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 120 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.575 | 1 | 34 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.011 | 2 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-8 | 3 | 36 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-8 | 4 | 35 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 69 | 130 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.76E-25 | 69 | 130 | No hit | No description |
Pfam | PF00847 | 3.7E-12 | 69 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 70 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 70 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-18 | 70 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGLLGAYDDE ETAAHAYDLA ALKYWGQDTI LNFPLSTYQE ELKDMEGQSK EEYIGSLRRK 60 SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA YDMAAIEYRG 120 LNAVTNFDLS RYIKWLRPNA RNETHQNHNH IDNGNLIPNP SQDFGLSFTS YQQSLSTKEN 180 TTSLPRPSGG SVGSASSALG LLLQSSKFKE MLERTSSNDY PLMPLESDPP RKSFPDDIQT 240 YFDCQDSSNY TEGDDIIFGE LNTFSSPIFH CELDC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G048400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB774161 | 1e-133 | AB774161.1 Ricinus communis RcWRI3 mRNA for AP2-type transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632327.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 2e-83 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2C9UQW2 | 0.0 | A0A2C9UQW2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025233m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 8e-77 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G048400.2.p |
Publications ? help Back to Top | |||
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