PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.13G043000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 556aa MW: 60446.5 Da PI: 7.1534 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.5e-16 | 339 | 385 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Manes.13G043000.1.p 339 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 385 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.15E-20 | 333 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.146 | 335 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-16 | 338 | 389 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-21 | 339 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-13 | 339 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-18 | 341 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 556 aa Download sequence Send to blast |
MNRYVPDFEI GDDCAIPTSS TFSRPKKSIT SEDDIMELLW QNGQVVVQSQ TQMSVKKAQH 60 HKYDDAVLPV EQSTPREIRS SSNEQQQHLF MQEDEMASWL HYPLNDTNFD QDFCADLLYP 120 STGYVSSTTT NTSAVPQRST HNPEARLHPT VSAASAMPTA TATASRPPIP PTRRAEVVQN 180 FGHFSRHRAK GGKSESGPSN LKNVVRESTV VDSTDTSATG SESRTSEAAF ARSAAGVSSV 240 NINASGTGSG AAVAGTSSRE GGSNNKDMTT REMTVTSSPG GSSASAEPPA LKLATDDRKR 300 KGREEDTEYH SEDVEFESAD AKRQVRGSTS TKRSRAAEVH NLSERRRRDR INEKMKALQE 360 LIPRCNKSDK ASMLDEAIEY LKSLQLQVQM MSMGCSMVPM MFSGIQQYMP PLRMGMGIGM 420 GMEMGMNRPM MPFPNVLAAA PMPTPVAAAH LGPRFPKPAF HMPPVPAPPP DPSRTQATNQ 480 SDPMLSAVSA QNPNQPRPPI FSDPYQQYLG LQQMQKPVSQ NQEMTRPGTS QAAENLDNSP 540 SGSGTQYSSK TPLAL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 343 | 348 | ERRRRD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.13G043000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633340.1 | 0.0 | transcription factor PIF1-like isoform X1 | ||||
TrEMBL | A0A251JFP7 | 0.0 | A0A251JFP7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027941m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20180.3 | 1e-63 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.13G043000.1.p |